Transcript: Human XM_006721632.3

PREDICTED: Homo sapiens solute carrier family 35 member B1 (SLC35B1), transcript variant X1, mRNA.

Source:
NCBI, updated 2019-09-08
Taxon:
Homo sapiens (human)
Gene:
SLC35B1 (10237)
Length:
1721
CDS:
25..1206

Additional Resources:

NCBI RefSeq record:
XM_006721632.3
NBCI Gene record:
SLC35B1 (10237)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Human XM_006721632.3, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Human Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000044407 CCATCATCACTACAACTCGAA pLKO.1 1046 CDS 100% 2.640 2.112 N SLC35B1 n/a
2 TRCN0000418919 AGTACCTGTGTGTGCTGTTAA pLKO_005 656 CDS 100% 13.200 9.240 N SLC35B1 n/a
3 TRCN0000435872 GGGTCAGAGCTTCATCTTTAT pLKO_005 993 CDS 100% 13.200 9.240 N SLC35B1 n/a
4 TRCN0000419766 GGGTGTCTTTGTCTGCTATTT pLKO_005 192 CDS 100% 13.200 9.240 N SLC35B1 n/a
5 TRCN0000424656 GTTCTTGAGCTTTGCTGAAAG pLKO_005 921 CDS 100% 10.800 7.560 N SLC35B1 n/a
6 TRCN0000434559 TTGGTCTTGATGCCAAGTTTG pLKO_005 1157 CDS 100% 10.800 7.560 N SLC35B1 n/a
7 TRCN0000436659 CTGTGATCCTCTTCGCCAATC pLKO_005 1088 CDS 100% 6.000 4.200 N SLC35B1 n/a
8 TRCN0000044403 GCCTTAACTTTGGTCTTCATT pLKO.1 391 CDS 100% 5.625 3.938 N SLC35B1 n/a
9 TRCN0000044406 GCCAAGATCTTGATCCAGTTT pLKO.1 436 CDS 100% 4.950 3.465 N SLC35B1 n/a
10 TRCN0000044404 CATCTATAACATCCTGCTCTT pLKO.1 954 CDS 100% 4.050 2.835 N SLC35B1 n/a
11 TRCN0000044405 CCACATGATGCTGAACATCAA pLKO.1 843 CDS 100% 0.495 0.347 N SLC35B1 n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript XM_006721632.3, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

Clone ID DNA Barcode Vector Sequenced %[?] Nuc. Match %[?] Prot. Match %[?] Epitope Tag Match Diffs[?] Addgene[?]
1 ccsbBroadEn_07573 pDONR223 100% 81.7% 81.1% None (many diffs) n/a
2 ccsbBroad304_07573 pLX_304 0% 81.7% 81.1% V5 (many diffs) n/a
3 TRCN0000491328 GCAAGTGCCCTCGACGACCACTAC pLX_317 31% 81.7% 81.1% V5 (many diffs) n/a
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