Construct: ORF TRCN0000491328

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF000761.1_s317c1
Derived from:
ccsbBroadEn_07573
DNA Barcode:
GCAAGTGCCCTCGACGACCACTAC
Epitope Tag:
V5
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
SLC35B1 (10237)

Vector Information:

Vector Backbone:
pLX_317
Pol II Cassette 1:
SV40-PuroR
Pol II Cassette 2:
EF1a-TRCN0000491328
Selection Marker:
PuroR
Visible Reporter:
n/a
Epitope Tag:
V5

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 10237 SLC35B1 solute carrier family 35 me... NM_005827.4 99.7% 99.3% 8C>T;242G>A
2 human 10237 SLC35B1 solute carrier family 35 me... XM_006721632.3 81.7% 81.1% (many diffs)
3 human 10237 SLC35B1 solute carrier family 35 me... NM_001278784.2 79% 76% 0_1ins176;32_33ins25;41G>A
4 human 10237 SLC35B1 solute carrier family 35 me... XM_005256929.3 79% 76% 0_1ins176;32_33ins25;41G>A
5 human 10237 SLC35B1 solute carrier family 35 me... XM_011524180.2 79% 76% 0_1ins176;32_33ins25;41G>A
6 human 10237 SLC35B1 solute carrier family 35 me... XM_011524179.2 77.5% 76.8% (many diffs)
7 mouse 110172 Slc35b1 solute carrier family 35, m... NM_016752.1 89.5% 95.3% (many diffs)
8 mouse 110172 Slc35b1 solute carrier family 35, m... XM_006531985.1 62% 67.7% (many diffs)
9 mouse 110172 Slc35b1 solute carrier family 35, m... XM_006531986.2 54.4% 59.3% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
66
ORF end:
1032
ORF length:
966
Sequence:
1tcttccattt caggtgtcgt gaggctagca tcgattgatc aacaagtttg tacaaaaaag
61ttggcatggc ctttagcagc tccctggtgc ccgaccggct gcgcctgccg ctctgcttcc
121tgggtgtctt tgtctgctat ttttactatg ggatcctgca ggaaaagata acaagaggaa
181agtatgggga aggagccaag caggagacgt tcacctttgc cttaactttg gtcttcattc
241aatgtgtgat caatgctgtg tttgccaaga tcttgatcca gttttttgac actgccaggg
301tggatcatac ccggagctgg ctctatgctg cctgttctat ctcctatctg ggtgccatgg
361tctccagcaa ttcagcacta cagtttgtca actacccaac tcaggtcctt ggtaaatcct
421gcaagccaat cccagtcatg ctccttgggg tgaccctctt gaagaagaag tacccgttgg
481ccaagtacct gtgtgtgctg ttaattgtgg ctggagtggc ccttttcatg tacaaaccca
541agaaagttgt tgggatagaa gaacacacag tcggctatgg agagctactc ttgctattat
601cgctgaccct ggatggactg actggtgttt cccaggacca catgcgggct cattaccaaa
661caggctccaa ccacatgatg ctgaacatca acctttggtc gacattgctg ctgggaatgg
721gaatcctgtt cactggGGAG CTCTGGGAGT TCTTGAGCTT TGCTGAAAGG TACCCTGCCA
781TCATCTATAA CATCCTGCTC TTTGGGCTGA CCAGTGCCCT GGGTCAGAGC TTCATCTTTA
841TGACGGTTGT GTATTTTGGT CCCCTGACCT GCTCCATCAT CACTACAACT CGAAAGTTCT
901TCACAATTTT GGCCTCTGTG ATCCTCTTCG CCAATCCCAT CAGCCCCATG CAGTGGGTGG
961GCACTGTGCT TGTGTTCCTG GGTCTTGGTC TTGATGCCAA GTTTGGGAAA GGAGCTAAGA
1021AGACATCCCA CTACCCTACT TTCTTGTACA AAGTGGTTGA TATCGGTAAG CCTATCCCTA
1081ACCCTCTCCT CGGTCTCGAT TCTACGTAGT AATGAACTAG TCCGTAACTT GAAAGTATTT
1141CGATTTCTTG GCTTTATATA TCTTGTGGAA AGGACGAGCA AGTGCCCTCG ACGACCACTA
1201CACGCGTTAA GTCgacaatc aacctctgga ttacaaaatt tgtgaaagat t

Download FASTA (ORF) (Full)