Transcript: Mouse XM_011240775.2

PREDICTED: Mus musculus family with sequence similarity 53, member A (Fam53a), transcript variant X1, mRNA.

Source:
NCBI, updated 2016-06-22
Taxon:
Mus musculus (mouse)
Gene:
Fam53a (74504)
Length:
2013
CDS:
589..1797

Additional Resources:

NCBI RefSeq record:
XM_011240775.2
NBCI Gene record:
Fam53a (74504)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Mouse XM_011240775.2, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Mouse Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000127340 CCGTCCTTGGACTTTCTGAAA pLKO.1 1456 CDS 100% 4.950 3.960 N Fam53a n/a
2 TRCN0000127339 CCTGACCAGTGGAAATAACTT pLKO.1 1844 3UTR 100% 5.625 3.938 N Fam53a n/a
3 TRCN0000127343 CCTGGACTATGAAGACGATGA pLKO.1 1515 CDS 100% 4.050 2.835 N Fam53a n/a
4 TRCN0000127342 GCAGAACCAGAGTTTGGATGA pLKO.1 615 CDS 100% 4.050 2.835 N Fam53a n/a
5 TRCN0000127341 CTCTCACAAGAGCACCTTGTA pLKO.1 1273 CDS 100% 0.495 0.347 N Fam53a n/a
Download CSV

shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript XM_011240775.2, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

Download CSV

All ORF constructs matching this transcript

No results found.