Transcript: Mouse XM_011241788.1

PREDICTED: Mus musculus teneurin transmembrane protein 4 (Tenm4), transcript variant X2, mRNA.

Source:
NCBI, updated 2016-06-22
Taxon:
Mus musculus (mouse)
Gene:
Tenm4 (23966)
Length:
13165
CDS:
90..8663

Additional Resources:

NCBI RefSeq record:
XM_011241788.1
NBCI Gene record:
Tenm4 (23966)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Mouse XM_011241788.1, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Mouse Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000112331 CGCCATTGAATCAGTGGATAA pLKO.1 2054 CDS 100% 10.800 15.120 N Tenm4 n/a
2 TRCN0000112333 CCGTGGGTTATGAGTATGAAT pLKO.1 3763 CDS 100% 5.625 7.875 N Tenm4 n/a
3 TRCN0000112330 GCTAACTTGTCTCGTGTGTAA pLKO.1 9144 3UTR 100% 4.950 6.930 N Tenm4 n/a
4 TRCN0000433746 TTCACCCTTCGGATCCTATAT pLKO_005 5928 CDS 100% 13.200 10.560 N Tenm4 n/a
5 TRCN0000112334 CCTGTTACATACCTTCTACTT pLKO.1 6344 CDS 100% 4.950 3.465 N Tenm4 n/a
6 TRCN0000112332 GCCCATTGATAATGGCCTCAA pLKO.1 5759 CDS 100% 4.050 2.430 N Tenm4 n/a
7 TRCN0000344207 TGCGGGTTCACAACCGAAATC pLKO_005 5845 CDS 100% 10.800 15.120 N TENM4 n/a
Download CSV

shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript XM_011241788.1, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

Download CSV

All ORF constructs matching this transcript

No results found.