Transcript: Mouse XM_011243456.2

PREDICTED: Mus musculus potassium voltage gated channel, Shaw-related subfamily, member 2 (Kcnc2), transcript variant X13, mRNA.

Source:
NCBI, updated 2016-06-22
Taxon:
Mus musculus (mouse)
Gene:
Kcnc2 (268345)
Length:
11837
CDS:
7458..8786

Additional Resources:

NCBI RefSeq record:
XM_011243456.2
NBCI Gene record:
Kcnc2 (268345)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Mouse XM_011243456.2, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Mouse Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000125024 CCCGCATCTTATGAGGCATTT pLKO.1 10802 3UTR 100% 10.800 15.120 N Kcnc2 n/a
2 TRCN0000125025 CGCCATTATCACCTCCAGAAA pLKO.1 8518 CDS 100% 4.950 6.930 N Kcnc2 n/a
3 TRCN0000044844 CGCTCTAGTACCAGAGACAAA pLKO.1 8553 CDS 100% 4.950 3.960 N KCNC2 n/a
4 TRCN0000125026 GTGTGGTTTACGTTTGAATTT pLKO.1 7740 CDS 100% 13.200 9.240 N Kcnc2 n/a
5 TRCN0000069143 CGAAGCAGAAACTTCCAAGAA pLKO.1 8323 CDS 100% 4.950 3.465 N Kcnc2 n/a
6 TRCN0000069145 CTCTTGAACATCATTGACTTT pLKO.1 7809 CDS 100% 4.950 3.465 N Kcnc2 n/a
7 TRCN0000069147 CCAAACATGGTCAGGGATGTT pLKO.1 8204 CDS 100% 0.495 0.347 N Kcnc2 n/a
8 TRCN0000069144 GCCTGTCATTGTCAACAATTT pLKO.1 8276 CDS 100% 13.200 7.920 N Kcnc2 n/a
9 TRCN0000166364 CACACACACACACACACACAA pLKO.1 5218 5UTR 100% 4.950 2.475 Y KAAG1 n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript XM_011243456.2, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

No results found.