Transcript: Mouse XM_011244116.1

PREDICTED: Mus musculus MOK protein kinase (Mok), transcript variant X11, mRNA.

Source:
NCBI, updated 2016-06-22
Taxon:
Mus musculus (mouse)
Gene:
Mok (26448)
Length:
1298
CDS:
108..1055

Additional Resources:

NCBI RefSeq record:
XM_011244116.1
NBCI Gene record:
Mok (26448)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Mouse XM_011244116.1, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Mouse Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000361680 GCTGCGTGTTCTACGAGATTG pLKO_005 358 CDS 100% 10.800 15.120 N Mok n/a
2 TRCN0000023140 CGGGTTCTACACATACAAGAT pLKO.1 320 CDS 100% 4.950 6.930 N Mok n/a
3 TRCN0000023139 GCCGGAGAATATCCTAGTAAA pLKO.1 182 CDS 100% 13.200 10.560 N Mok n/a
4 TRCN0000001714 CTGGTTCTCTTGCACTAATAT pLKO.1 12 5UTR 100% 15.000 10.500 N MOK n/a
5 TRCN0000361679 CTGGTTCTCTTGCACTAATAT pLKO_005 12 5UTR 100% 15.000 10.500 N Mok n/a
6 TRCN0000361605 ATGACCCTGACGAACGAATTG pLKO_005 595 CDS 100% 10.800 7.560 N Mok n/a
7 TRCN0000368731 CCGGAGAATATCCTAGTAAAG pLKO_005 183 CDS 100% 10.800 7.560 N Mok n/a
8 TRCN0000023142 GACATCAAACCTCACCTGAAA pLKO.1 990 CDS 100% 4.950 3.465 N Mok n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript XM_011244116.1, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

Clone ID DNA Barcode Vector Sequenced %[?] Nuc. Match %[?] Prot. Match %[?] Epitope Tag Match Diffs[?] Addgene[?]
1 ccsbBroadEn_14824 pDONR223 0% 26.2% 28.8% None (many diffs) n/a
2 ccsbBroad304_14824 pLX_304 0% 26.2% 28.8% V5 (many diffs) n/a
3 TRCN0000472348 TGGACGGTGAACCATGGTTTGCCT pLX_317 47.2% 26.2% 28.8% V5 (many diffs) n/a
4 ccsbBroadEn_13939 pDONR223 100% 26.2% 28.7% None (many diffs) n/a
5 ccsbBroad304_13939 pLX_304 0% 26.2% 28.7% V5 (many diffs) n/a
6 TRCN0000466053 ACTCATTGTGTTAAGAACACACCT pLX_317 45.9% 26.2% 28.7% V5 (many diffs) n/a
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