Transcript: Mouse XM_011244557.2

PREDICTED: Mus musculus ATP/GTP binding protein 1 (Agtpbp1), transcript variant X9, mRNA.

Source:
NCBI, updated 2016-06-22
Taxon:
Mus musculus (mouse)
Gene:
Agtpbp1 (67269)
Length:
4398
CDS:
300..3641

Additional Resources:

NCBI RefSeq record:
XM_011244557.2
NBCI Gene record:
Agtpbp1 (67269)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Mouse XM_011244557.2, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Mouse Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000306489 TAAATTCAGTGTGTCCGAATA pLKO_005 4108 3UTR 100% 10.800 15.120 N Agtpbp1 n/a
2 TRCN0000031454 GCGTAAAGAAAGGAGTGGTAA pLKO.1 1711 CDS 100% 4.950 6.930 N Agtpbp1 n/a
3 TRCN0000306488 AGATTGGCACCGGCATGATAA pLKO_005 1061 CDS 100% 13.200 10.560 N Agtpbp1 n/a
4 TRCN0000031458 CGGCATAGAAACATGCTCATT pLKO.1 1083 CDS 100% 4.950 3.960 N Agtpbp1 n/a
5 TRCN0000332562 CGGCATAGAAACATGCTCATT pLKO_005 1083 CDS 100% 4.950 3.960 N Agtpbp1 n/a
6 TRCN0000031455 CCTAAGATACTGAGCCACATT pLKO.1 3447 CDS 100% 4.950 3.465 N Agtpbp1 n/a
7 TRCN0000031457 GCGAGTTTCTTAGTTGCCAAA pLKO.1 603 CDS 100% 4.050 2.835 N Agtpbp1 n/a
8 TRCN0000332493 GCGAGTTTCTTAGTTGCCAAA pLKO_005 603 CDS 100% 4.050 2.835 N Agtpbp1 n/a
9 TRCN0000031456 CCAGACCTCTATATTGAGATT pLKO.1 2154 CDS 100% 4.950 2.970 N Agtpbp1 n/a
10 TRCN0000354231 CCAGACCTCTATATTGAGATT pLKO_005 2154 CDS 100% 4.950 2.970 N Agtpbp1 n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript XM_011244557.2, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

Clone ID DNA Barcode Vector Sequenced %[?] Nuc. Match %[?] Prot. Match %[?] Epitope Tag Match Diffs[?] Addgene[?]
1 ccsbBroadEn_02745 pDONR223 100% 73.9% 78.6% None (many diffs) n/a
2 ccsbBroad304_02745 pLX_304 0% 73.9% 78.6% V5 (many diffs) n/a
3 TRCN0000467358 GCAACTTTACACCAATTTTGTATC pLX_317 11.7% 73.9% 78.6% V5 (many diffs) n/a
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