Transcript: Mouse XM_011248758.2

PREDICTED: Mus musculus homeobox B8 (Hoxb8), transcript variant X4, mRNA.

Source:
NCBI, updated 2016-06-22
Taxon:
Mus musculus (mouse)
Gene:
Hoxb8 (15416)
Length:
2450
CDS:
873..1601

Additional Resources:

NCBI RefSeq record:
XM_011248758.2
NBCI Gene record:
Hoxb8 (15416)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Mouse XM_011248758.2, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Mouse Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000304443 TGCCTATTCACGCCGTAATTC pLKO_005 2035 3UTR 100% 13.200 18.480 N Hoxb8 n/a
2 TRCN0000016019 GAGTTCCTATTTAATCCCTAT pLKO.1 1359 CDS 100% 4.050 5.670 N HOXB8 n/a
3 TRCN0000016018 CGCTAGTGGTAGTATCTCGTA pLKO.1 1764 3UTR 100% 2.640 3.696 N HOXB8 n/a
4 TRCN0000285121 CGCTAGTGGTAGTATCTCGTA pLKO_005 1764 3UTR 100% 2.640 3.696 N HOXB8 n/a
5 TRCN0000070879 GACAAGTTTCCCAGCAGTAAA pLKO.1 1491 CDS 100% 13.200 10.560 N Hoxb8 n/a
6 TRCN0000316044 GACAAGTTTCCCAGCAGTAAA pLKO_005 1491 CDS 100% 13.200 10.560 N Hoxb8 n/a
7 TRCN0000070882 CGGCAACTTCTACGGCTACGA pLKO.1 1118 CDS 100% 0.880 0.704 N Hoxb8 n/a
8 TRCN0000016020 CCAATTATTATGACTGCGGCT pLKO.1 934 CDS 100% 0.540 0.432 N HOXB8 n/a
9 TRCN0000070880 GTTCCTATTTAATCCCTATCT pLKO.1 1361 CDS 100% 4.950 3.465 N Hoxb8 n/a
10 TRCN0000349142 GTTCCTATTTAATCCCTATCT pLKO_005 1361 CDS 100% 4.950 3.465 N Hoxb8 n/a
11 TRCN0000070878 CCCTTCGCAAATCCAGGAGTT pLKO.1 1022 CDS 100% 4.050 2.835 N Hoxb8 n/a
12 TRCN0000315975 CCCTTCGCAAATCCAGGAGTT pLKO_005 1022 CDS 100% 4.050 2.835 N Hoxb8 n/a
13 TRCN0000304444 CAAGCGGAGGATCGAGGTATC pLKO_005 1388 CDS 100% 2.000 1.400 N Hoxb8 n/a
14 TRCN0000070881 CGATGCGCAGAAGGGTGACAA pLKO.1 1574 CDS 100% 1.650 1.155 N Hoxb8 n/a
15 TRCN0000273964 AGTACGCAGACTGCAAGCTTG pLKO_005 1189 CDS 100% 4.050 5.670 N HOXB8 n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript XM_011248758.2, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

No results found.