Transcript: Human XM_011509483.3

PREDICTED: Homo sapiens potassium sodium-activated channel subfamily T member 2 (KCNT2), transcript variant X8, mRNA.

Source:
NCBI, updated 2019-09-08
Taxon:
Homo sapiens (human)
Gene:
KCNT2 (343450)
Length:
2615
CDS:
252..2531

Additional Resources:

NCBI RefSeq record:
XM_011509483.3
NBCI Gene record:
KCNT2 (343450)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Human XM_011509483.3, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Human Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000056253 CCCTTAAAGATCAAGACCTAT pLKO.1 1342 CDS 100% 4.950 6.930 N KCNT2 n/a
2 TRCN0000056256 GCTAAAGGTTACCCACCTTAT pLKO.1 2253 CDS 100% 1.080 1.512 N KCNT2 n/a
3 TRCN0000428952 CAGGTACAGGTTTCGAGATTT pLKO_005 290 CDS 100% 13.200 10.560 N KCNT2 n/a
4 TRCN0000056254 CCAGGATTATTATGTGGTGAT pLKO.1 1232 CDS 100% 4.050 3.240 N KCNT2 n/a
5 TRCN0000056257 CCCTTCATCTTGGAAATAATT pLKO.1 666 CDS 100% 15.000 10.500 N KCNT2 n/a
6 TRCN0000412683 AGGTTTCAGTGGCATTGATAA pLKO_005 574 CDS 100% 13.200 9.240 N KCNT2 n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript XM_011509483.3, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

Clone ID DNA Barcode Vector Sequenced %[?] Nuc. Match %[?] Prot. Match %[?] Epitope Tag Match Diffs[?] Addgene[?]
1 ccsbBroadEn_13606 pDONR223 100% 68.2% 68.3% None 2277_2277delAins1057 n/a
2 ccsbBroad304_13606 pLX_304 0% 68.2% 68.3% V5 2277_2277delAins1057 n/a
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