Transcript: Human XM_011509754.2

PREDICTED: Homo sapiens innate immunity activator (INAVA), transcript variant X1, mRNA.

Source:
NCBI, updated 2019-09-08
Taxon:
Homo sapiens (human)
Gene:
INAVA (55765)
Length:
4920
CDS:
1077..2813

Additional Resources:

NCBI RefSeq record:
XM_011509754.2
NBCI Gene record:
INAVA (55765)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Human XM_011509754.2, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Human Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000437102 AGGATCGGAGCGGCTTACAAA pLKO_005 1326 CDS 100% 5.625 3.938 N INAVA n/a
2 TRCN0000140233 GCTATGCTTCTGCTCTGAGAA pLKO.1 4057 3UTR 100% 4.950 3.465 N INAVA n/a
3 TRCN0000438593 CAGTTTGTGTGCTGCGGAGAT pLKO_005 2728 CDS 100% 4.050 2.835 N INAVA n/a
4 TRCN0000139149 CCTGTGCAAGTCTTTGTACCT pLKO.1 2763 CDS 100% 2.640 1.584 N INAVA n/a
5 TRCN0000165027 GAACTCCTGACCTCAAGTGAT pLKO.1 3855 3UTR 100% 4.950 2.475 Y LOC387873 n/a
6 TRCN0000140759 GCCTTTCAAAGTGCTGGGATT pLKO.1 3888 3UTR 100% 4.050 2.025 Y INAVA n/a
7 TRCN0000155070 GCCTTTCAAAGTGCTGGGATT pLKO.1 3888 3UTR 100% 4.050 2.025 Y ASB6 n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript XM_011509754.2, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

Clone ID DNA Barcode Vector Sequenced %[?] Nuc. Match %[?] Prot. Match %[?] Epitope Tag Match Diffs[?] Addgene[?]
1 ccsbBroadEn_08584 pDONR223 100% 87% 87% None 0_1ins255;1357C>T;1551C>A n/a
2 TRCN0000470845 CTACACCCTTAAGGCGGGTTAGCA pLX_317 17% 87% 87% V5 0_1ins255;1357C>T;1551C>A n/a
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