Construct: ORF ccsbBroadEn_08584
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF013416.1_s300c1, BRDN0000398134
- DNA Barcode:
- None
- Epitope Tag:
- None
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- INAVA (55765)
Vector Information:
- Vector Backbone:
- pDONR223
- Pol II Cassette 1:
- n/a
- Pol II Cassette 2:
- n/a
- Selection Marker:
- n/a
- Visible Reporter:
- n/a
- Epitope Tag:
- n/a
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 55765 | INAVA | innate immunity activator | NM_018265.4 | 99.8% | 99.8% | 219C>G;1612C>T;1806C>A |
| 2 | human | 55765 | INAVA | innate immunity activator | NM_001142569.3 | 87% | 87% | 0_1ins255;1357C>T;1551C>A |
| 3 | human | 55765 | INAVA | innate immunity activator | XM_011509754.2 | 87% | 87% | 0_1ins255;1357C>T;1551C>A |
| 4 | human | 55765 | INAVA | innate immunity activator | XM_011509755.1 | 87% | 87% | 0_1ins255;1357C>T;1551C>A |
| 5 | human | 55765 | INAVA | innate immunity activator | NM_001367289.1 | 84% | 84% | (many diffs) |
| 6 | human | 55765 | INAVA | innate immunity activator | NM_001367290.1 | 60% | 58.3% | (many diffs) |
| 7 | human | 55765 | INAVA | innate immunity activator | XM_011509756.2 | 48.5% | 31.7% | (many diffs) |
| 8 | mouse | 67313 | 5730559C18Rik | RIKEN cDNA 5730559C18 gene | NM_028872.3 | 82.3% | 83.7% | (many diffs) |
| 9 | mouse | 67313 | 5730559C18Rik | RIKEN cDNA 5730559C18 gene | XM_006529802.3 | 82.2% | 83.6% | (many diffs) |
| 10 | mouse | 67313 | 5730559C18Rik | RIKEN cDNA 5730559C18 gene | XM_006529804.3 | 73.4% | 76.4% | (many diffs) |
| 11 | mouse | 67313 | 5730559C18Rik | RIKEN cDNA 5730559C18 gene | XM_006529805.3 | 73.4% | 76.4% | (many diffs) |
| 12 | mouse | 67313 | 5730559C18Rik | RIKEN cDNA 5730559C18 gene | XM_006529806.3 | 73.4% | 76.4% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 69
- ORF end:
- 2058
- ORF length:
- 1989
- Sequence:
-
1 gttcgttgca acaaattgat gagcaatgct tttttataat gccaacttTG TACAAAAAAG 61 TTGGCACCAT GCTGCAAATG CCGAAGTTAA ATGAAATACC TCCGGGGAGG GCAGGCCGCA 121 GGGAGGCTCG GGGGGAGGGA AGATGGCCTG GACAAACAGG TCCTGAAGCT GCGAGGCTGG 181 AGTGGAGGGC GCAGGGGCAG GCGGGCGGCG CCAGAGCTCC ATGGGACAGC TGGGGAAGCT 241 CCAGGCTACC TACACAACCT GGCCCAGGCT GGTCACGGTG TCCCCCGTCC CTGCTCTGTG 301 CCCTCTCCTT CCAGAAATCC ACCATGGAGA GTAAGGATGA GGTCAGCGAC ACCGACAGTG 361 GCATCATCCT GCAGTCTGGC CCCGACAGCC CGGTCTCCCC AATGAAGGAG CTGACCCATG 421 CAGTGCACAA GCAGCAGAGG GCCCTGGAAG CGAGGCTGGA GGCCTGCCTG GAGGAGCTGA 481 GGAGACTCTG CCTTCGGGAA GCGGAGCTGA CGGGCACCTT GCCAGCGGAG TATCCCCTCA 541 AACCAGGGGA AAAGGCCCCC AAGGTTCGCC GCAGGATCGG AGCGGCTTAC AAACTGGATG 601 ACTGGGCCTT GCACAGAGAG GACCCCCTAA GCAGCCTGGA GCGCCAGCTG GCCCTGCAGC 661 TGCAGATCAC AGAGGCAGCC CGTCGGCTGT GCCTGGAGGA GAACCTCAGC AGGCAGGCTC 721 GGCGGCAGCG GAAGCACTCC ATGCTGCAGG AGGAGAAGAA GCTGCAGGAG CTCCAGCGCT 781 GCCTGGTCGA GCGGCGGCGC AATAGCGAGC CACCTCCGGC TGCTGCTCTC CCCCTGGGCC 841 GAGAGCTCAG TGCCTCTGAT GACAGCTCCC TGTCAGATGG GCTCCTCCTG GAGGAAGAGG 901 AATCCCAAGT GCCAAAACCT CCTCCAGAGT CTCCAGCCCC ACCTTCTCGG CCTCTCCCAC 961 CCCAAACCCT TGAGGGTCTG CAGCCAACAG GACCTGAGGC TGGGAGCCCA GAACGGGCTC 1021 CAGTCCAGAA CAGCCCCTGG AAGGAAACCA GCCTGGACCA CCCCTATGAG AAGCCCAGGA 1081 AGTCTTCTGA GCCCTGGAGC GAGTCCAGCA GCCCAGCCAC CACACCACAG GATGGGCCCA 1141 GTGCCTCCAG CCTGTGGCTT CTGGAGCCTG CCTCCTACCA CGTGGTTCCC ATCCGTGGTG 1201 TTCCTGGCCA GTGGCAGGGC CGCACCAGTG CCCCAGCCAC CCCTGAGATA CAGGGGAGGA 1261 GGGGCCAGTC GCAGTCTCTG AGGGTGGATT CCTTCCGGGC GGGTCCTGAG GGCCGAGGTC 1321 GCAGCGCCTT TCCCCGCCGC CGCCCCACTC ACTACACGGT GACAGTGCCA GATTCCTGCT 1381 TTCCCGCGAC CAAGCCCCCG CTGCCCCACG CCGCCTGCCA CTCCTGCTCA GAAGACAGTG 1441 GCTCTGACGT CTCCAGCATC TCCCACCCCA CTTCGCCGGG CAGCAGCAGC CCCGACATCT 1501 CCTTTCTGCA GCCTCTCTCC CCTCCCAAGA CCCATCGTCA CCGCGGGGCC TGGGTCCCAG 1561 CCGGCAGCAG AGAGCTGGTC GCCCACCACC CCAAGCTACT GCTGCCGCCT GGCTATTTCC 1621 CGGCGGGGCG GTACGTGGTG GTGGCTGAGA GCCCCCTGCC GCCTGGCGAG TGGGAGCTGT 1681 GCCGCGCAGC CCCGGGCCCT GCTTACGAGG AGGAGGGCAC TCCCCTGCGC TACCAGCGTC 1741 TGGTGCCCTC CCGCAGCCGC ATCGTGCGGA CGCCCTCCCT GAAGGACAGC CCGGCAGGCC 1801 GGGGGCTCAG CAAGGCCGCC GTGTCCGAGG AGCTCAAGTG GTGGCACGAG CGTGCACGCC 1861 TCCGGAGCAC CCGACCCCAC TCACTGGACC GCCAAGGAGC TTTCCGGGTC AGGAGCCTGC 1921 CCCTTGGGAG AGAGGGCTTC GGACGAGCCC TGGGACCCCG GGCACAGGTG CCCACAGTTT 1981 GTGTGCTGCG GAGATCGCCT GATGGGGCCC CTGTGCAAGT CTTTGTACCT GAAAAAGGAG 2041 AGATCATCAG CCAGGTGTTG CCAACTTTCT TGTACAAAGT tggcattata agaaagcatt 2101 gcttatcaat ttgttgcaac gaac