Transcript: Human XM_011511690.1

PREDICTED: Homo sapiens trafficking kinesin protein 2 (TRAK2), transcript variant X1, mRNA.

Source:
NCBI, updated 2019-09-08
Taxon:
Homo sapiens (human)
Gene:
TRAK2 (66008)
Length:
6371
CDS:
291..3035

Additional Resources:

NCBI RefSeq record:
XM_011511690.1
NBCI Gene record:
TRAK2 (66008)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Human XM_011511690.1, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Human Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000152107 CGTGCTCTGTATTGAGTATAA pLKO.1 5237 3UTR 100% 13.200 18.480 N TRAK2 n/a
2 TRCN0000297060 CGTGCTCTGTATTGAGTATAA pLKO_005 5237 3UTR 100% 13.200 18.480 N TRAK2 n/a
3 TRCN0000151623 GTTCAATGAGTCCTTTAGCTT pLKO.1 878 CDS 100% 3.000 4.200 N TRAK2 n/a
4 TRCN0000151696 CGAGTTACAAGACAGGAATAT pLKO.1 1271 CDS 100% 13.200 9.240 N TRAK2 n/a
5 TRCN0000286055 CGAGTTACAAGACAGGAATAT pLKO_005 1271 CDS 100% 13.200 9.240 N TRAK2 n/a
6 TRCN0000151916 CCAGCAGGTTTATATGTGAAT pLKO.1 4900 3UTR 100% 4.950 3.465 N TRAK2 n/a
7 TRCN0000297061 CCAGCAGGTTTATATGTGAAT pLKO_005 4900 3UTR 100% 4.950 3.465 N TRAK2 n/a
8 TRCN0000151380 GAAGAACAACTACCACAGTAT pLKO.1 432 CDS 100% 4.950 3.465 N TRAK2 n/a
9 TRCN0000151302 GCAGTTTATTAGGTGGACTAA pLKO.1 2923 CDS 100% 4.950 3.465 N TRAK2 n/a
10 TRCN0000277896 GCAGTTTATTAGGTGGACTAA pLKO_005 2923 CDS 100% 4.950 3.465 N TRAK2 n/a
11 TRCN0000151434 GCTTGTCACATAAAGACAGAA pLKO.1 981 CDS 100% 4.950 3.465 N TRAK2 n/a
12 TRCN0000154743 GCCAACATGAATGCAGTGGTA pLKO.1 4725 3UTR 100% 2.640 1.584 N TRAK2 n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript XM_011511690.1, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

Clone ID DNA Barcode Vector Sequenced %[?] Nuc. Match %[?] Prot. Match %[?] Epitope Tag Match Diffs[?] Addgene[?]
1 ccsbBroadEn_08898 pDONR223 100% 99.7% 99.4% None (many diffs) n/a
2 ccsbBroad304_08898 pLX_304 0% 99.7% 99.4% V5 (many diffs) n/a
3 TRCN0000474204 ACGGCAACGGTGATGGCTCCCGGC pLX_317 10.1% 99.7% 99.4% V5 (many diffs) n/a
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