Transcript: Human XM_011512672.1

PREDICTED: Homo sapiens Rho guanine nucleotide exchange factor 26 (ARHGEF26), transcript variant X1, mRNA.

Source:
NCBI, updated 2019-09-08
Taxon:
Homo sapiens (human)
Gene:
ARHGEF26 (26084)
Length:
5091
CDS:
212..2737

Additional Resources:

NCBI RefSeq record:
XM_011512672.1
NBCI Gene record:
ARHGEF26 (26084)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Human XM_011512672.1, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Human Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000423258 CAAATGGCCTTGCCGCTAATA pLKO_005 735 CDS 100% 13.200 18.480 N ARHGEF26 n/a
2 TRCN0000048289 CGGGTTACTAATTACGGATTT pLKO.1 343 CDS 100% 10.800 15.120 N ARHGEF26 n/a
3 TRCN0000048291 CCGAAGTATGAAGTCTGCAAA pLKO.1 2012 CDS 100% 4.950 6.930 N ARHGEF26 n/a
4 TRCN0000413720 ATATCCTCTGAACATTCATAT pLKO_005 1553 CDS 100% 13.200 9.240 N ARHGEF26 n/a
5 TRCN0000415924 ATGTCAAGCTACAATTGATAA pLKO_005 2668 CDS 100% 13.200 9.240 N ARHGEF26 n/a
6 TRCN0000415484 AGAGACAAGAGGCTATCTTTG pLKO_005 1527 CDS 100% 10.800 7.560 N ARHGEF26 n/a
7 TRCN0000425125 ATCTCTGCTCCTCCTAGTTTC pLKO_005 3007 3UTR 100% 10.800 7.560 N ARHGEF26 n/a
8 TRCN0000048288 GCATCCACATTTGACCCATAT pLKO.1 1778 CDS 100% 10.800 7.560 N ARHGEF26 n/a
9 TRCN0000424184 TCCTTAAGAGATCAGCTATTG pLKO_005 2240 CDS 100% 10.800 7.560 N ARHGEF26 n/a
10 TRCN0000048292 GCAAGTCTACTTCTTTCTCTT pLKO.1 2158 CDS 100% 4.950 3.465 N ARHGEF26 n/a
11 TRCN0000048290 CGCGAATGAGAAAGTGGAGAT pLKO.1 2380 CDS 100% 4.050 2.835 N ARHGEF26 n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript XM_011512672.1, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

Clone ID DNA Barcode Vector Sequenced %[?] Nuc. Match %[?] Prot. Match %[?] Epitope Tag Match Diffs[?] Addgene[?]
1 ccsbBroadEn_11806 pDONR223 100% 31% 30.9% None 1_1710del;1842_1843ins90;1971C>G n/a
2 ccsbBroad304_11806 pLX_304 0% 31% 30.9% V5 1_1710del;1842_1843ins90;1971C>G n/a
3 TRCN0000474724 GTCAACTGGGGCATCTGGCACCTC pLX_317 44% 31% 30.9% V5 1_1710del;1842_1843ins90;1971C>G n/a
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