Transcript: Human XM_011513391.1

PREDICTED: Homo sapiens complexin 1 (CPLX1), transcript variant X1, mRNA.

Source:
NCBI, updated 2019-09-08
Taxon:
Homo sapiens (human)
Gene:
CPLX1 (10815)
Length:
2071
CDS:
168..527

Additional Resources:

NCBI RefSeq record:
XM_011513391.1
NBCI Gene record:
CPLX1 (10815)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Human XM_011513391.1, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Human Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000183408 CCGTGTTCACTTCTAAACTAA pLKO.1 1123 3UTR 100% 5.625 7.875 N CPLX1 n/a
2 TRCN0000179647 GCCGTGTTCACTTCTAAACTA pLKO.1 1122 3UTR 100% 5.625 7.875 N CPLX1 n/a
3 TRCN0000146755 CCATAACGTTAGACTGCAATA pLKO.1 1688 3UTR 100% 10.800 7.560 N CPLX1 n/a
4 TRCN0000179857 CAAGTACGGCATCAAGAAGAA pLKO.1 326 CDS 100% 4.950 3.465 N CPLX1 n/a
5 TRCN0000436946 CCGAGACAAGTACGGCATCAA pLKO_005 320 CDS 100% 4.950 3.465 N CPLX1 n/a
6 TRCN0000180543 GAGACAAGTACGGCATCAAGA pLKO.1 322 CDS 100% 4.950 3.465 N CPLX1 n/a
7 TRCN0000146968 CATAGCTTTAGAGAAGCCATA pLKO.1 1672 3UTR 100% 4.050 2.835 N CPLX1 n/a
8 TRCN0000180669 GCAGGACATGCTCAAGAAGTA pLKO.1 506 CDS 100% 4.950 2.970 N CPLX1 n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript XM_011513391.1, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

Clone ID DNA Barcode Vector Sequenced %[?] Nuc. Match %[?] Prot. Match %[?] Epitope Tag Match Diffs[?] Addgene[?]
1 ccsbBroadEn_02536 pDONR223 100% 88.8% 88.8% None 0_1ins45 n/a
2 ccsbBroad304_02536 pLX_304 0% 88.8% 88.8% V5 0_1ins45 n/a
3 TRCN0000467107 GTTATGTTGGCCATTTATTACTCA pLX_317 46.9% 88.8% 88.8% V5 0_1ins45 n/a
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