Transcript: Human XM_011514398.3

PREDICTED: Homo sapiens potassium channel tetramerization domain containing 20 (KCTD20), transcript variant X2, mRNA.

Source:
NCBI, updated 2019-09-08
Taxon:
Homo sapiens (human)
Gene:
KCTD20 (222658)
Length:
5727
CDS:
500..1759

Additional Resources:

NCBI RefSeq record:
XM_011514398.3
NBCI Gene record:
KCTD20 (222658)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Human XM_011514398.3, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Human Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000156423 CGAAGCAAATCCCTCACGAAT pLKO.1 1610 CDS 100% 4.950 6.930 N KCTD20 n/a
2 TRCN0000431856 GATGAACTTGACCGGCTAAAT pLKO_005 1697 CDS 100% 13.200 9.240 N KCTD20 n/a
3 TRCN0000157712 CCAGAGAAAGTGACGCTTCTT pLKO.1 845 CDS 100% 4.950 3.465 N KCTD20 n/a
4 TRCN0000157535 GCTCACACATTGGGTAGGAAT pLKO.1 2843 3UTR 100% 4.950 3.465 N KCTD20 n/a
5 TRCN0000153618 CCAGGTATGAAGTATGGCATA pLKO.1 3882 3UTR 100% 4.050 2.835 N KCTD20 n/a
6 TRCN0000152574 GCTTCTAACGACTTTCAGGAT pLKO.1 1736 CDS 100% 2.640 1.848 N KCTD20 n/a
7 TRCN0000222574 CGCCTGTAATCCCAGCACTTT pLKO.1 4856 3UTR 100% 4.950 2.475 Y ERAP2 n/a
8 TRCN0000140719 GATCACTTGAGGTCAGGAGTT pLKO.1 5208 3UTR 100% 4.050 2.025 Y P3H4 n/a
9 TRCN0000165299 GATCACTTGAGGTCAGGAGTT pLKO.1 5208 3UTR 100% 4.050 2.025 Y ORAI2 n/a
10 TRCN0000352971 GATCACTTGAGGTCAGGAGTT pLKO_005 5208 3UTR 100% 4.050 2.025 Y P3H4 n/a
11 TRCN0000078113 GCCTGTAATCCCAGCACTTTA pLKO.1 4857 3UTR 100% 13.200 6.600 Y LIAS n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript XM_011514398.3, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

No results found.