Transcript: Human XM_011515954.3

PREDICTED: Homo sapiens ataxin 7 like 1 (ATXN7L1), transcript variant X27, mRNA.

Source:
NCBI, updated 2019-09-08
Taxon:
Homo sapiens (human)
Gene:
ATXN7L1 (222255)
Length:
6686
CDS:
651..1091

Additional Resources:

NCBI RefSeq record:
XM_011515954.3
NBCI Gene record:
ATXN7L1 (222255)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Human XM_011515954.3, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Human Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000105007 TCCGACAATGTAGATTTAGAA pLKO.1 825 CDS 100% 5.625 7.875 N Atxn7l1 n/a
2 TRCN0000136260 GCAACAAGAAGGAAGAGCAAT pLKO.1 716 CDS 100% 4.950 6.930 N ATXN7L1 n/a
3 TRCN0000105008 CAAATTACACTGCTCCGACAA pLKO.1 812 CDS 100% 4.050 5.670 N Atxn7l1 n/a
4 TRCN0000135765 CAAATTACACTGCTCCGACAA pLKO.1 812 CDS 100% 4.050 5.670 N ATXN7L1 n/a
5 TRCN0000432531 TGACGACTTCTATCTCGTAGT pLKO_005 932 CDS 100% 4.050 5.670 N ATXN7L1 n/a
6 TRCN0000134733 GCTCCCTTTCATTGTCTATAT pLKO.1 1557 3UTR 100% 13.200 10.560 N ATXN7L1 n/a
7 TRCN0000433578 TATGCACTTATTTGGCCATTA pLKO_005 902 CDS 100% 10.800 8.640 N ATXN7L1 n/a
8 TRCN0000348933 GGAGGTTATGAGGCTTAATAA pLKO_005 875 CDS 100% 15.000 10.500 N Atxn7l1 n/a
9 TRCN0000105006 AGGGAGGTTATGAGGCTTAAT pLKO.1 873 CDS 100% 13.200 9.240 N Atxn7l1 n/a
10 TRCN0000138057 CAGGGAGGTTATGAGGCTTAA pLKO.1 872 CDS 100% 10.800 7.560 N ATXN7L1 n/a
11 TRCN0000136030 GCAAGACAACAGGAGAAATGA pLKO.1 1013 CDS 100% 5.625 3.938 N ATXN7L1 n/a
12 TRCN0000138305 CGCAGAAGAGACGTACAACTT pLKO.1 1102 3UTR 100% 4.950 3.465 N ATXN7L1 n/a
13 TRCN0000136004 GAAAGCAAGACAACAGGAGAA pLKO.1 1009 CDS 100% 4.050 2.835 N ATXN7L1 n/a
14 TRCN0000138546 CCAAGCCATAGAGAAGCATCA pLKO.1 1064 CDS 100% 4.050 2.430 N ATXN7L1 n/a
15 TRCN0000166364 CACACACACACACACACACAA pLKO.1 2979 3UTR 100% 4.950 2.475 Y KAAG1 n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript XM_011515954.3, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

Clone ID DNA Barcode Vector Sequenced %[?] Nuc. Match %[?] Prot. Match %[?] Epitope Tag Match Diffs[?] Addgene[?]
1 ccsbBroadEn_05270 pDONR223 100% 100% 100% None n/a
2 ccsbBroad304_05270 pLX_304 0% 100% 100% V5 n/a
3 TRCN0000467830 CACTTATTGTTCCCGTGCCTCGCA pLX_317 66.5% 100% 100% V5 n/a
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