Transcript: Human XM_011516635.3

PREDICTED: Homo sapiens tyrosylprotein sulfotransferase 1 (TPST1), transcript variant X6, mRNA.

Source:
NCBI, updated 2019-09-08
Taxon:
Homo sapiens (human)
Gene:
TPST1 (8460)
Length:
1650
CDS:
311..1372

Additional Resources:

NCBI RefSeq record:
XM_011516635.3
NBCI Gene record:
TPST1 (8460)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Human XM_011516635.3, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Human Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000035761 GCATCAGTACATTCAATGATT pLKO.1 872 CDS 100% 5.625 7.875 N TPST1 n/a
2 TRCN0000330249 ACGTAGCCAGCCAGTCAAATT pLKO_005 421 CDS 100% 13.200 9.240 N TPST1 n/a
3 TRCN0000330250 ACTTACCTTTCTAGGTTATTC pLKO_005 812 CDS 100% 13.200 9.240 N TPST1 n/a
4 TRCN0000330187 ATGTGGTCACGGTCAAGTAAA pLKO_005 647 CDS 100% 13.200 9.240 N TPST1 n/a
5 TRCN0000330188 CAGTGTATGGAGGTTGGTTAT pLKO_005 983 CDS 100% 10.800 7.560 N TPST1 n/a
6 TRCN0000330186 CAGGAGCCTCTTCCATACATG pLKO_005 1379 3UTR 100% 4.950 3.465 N TPST1 n/a
7 TRCN0000035759 CCAAGTAATCAAGCCAGTCAA pLKO.1 1174 CDS 100% 4.950 3.465 N TPST1 n/a
8 TRCN0000035763 CGGTGGATGAGAACACTCTTA pLKO.1 1052 CDS 100% 4.950 3.465 N TPST1 n/a
9 TRCN0000035760 CCTATCACAAAGATATGCCTT pLKO.1 501 CDS 100% 2.640 1.848 N TPST1 n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript XM_011516635.3, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

Clone ID DNA Barcode Vector Sequenced %[?] Nuc. Match %[?] Prot. Match %[?] Epitope Tag Match Diffs[?] Addgene[?]
1 ccsbBroadEn_01932 pDONR223 100% 95.4% 95.4% None 1043_1044ins51 n/a
2 ccsbBroad304_01932 pLX_304 0% 95.4% 95.4% V5 1043_1044ins51 n/a
3 TRCN0000472880 GCCGCAAAGCACGGCGATCTAAAC pLX_317 49.9% 95.4% 95.4% V5 1043_1044ins51 n/a
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