Transcript: Human XM_011517616.2

PREDICTED: Homo sapiens tripartite motif containing 55 (TRIM55), transcript variant X6, mRNA.

Source:
NCBI, updated 2019-09-08
Taxon:
Homo sapiens (human)
Gene:
TRIM55 (84675)
Length:
3502
CDS:
1252..2610

Additional Resources:

NCBI RefSeq record:
XM_011517616.2
NBCI Gene record:
TRIM55 (84675)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Human XM_011517616.2, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Human Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000034010 GCTTTGTGAGAAGTTTGATTA pLKO.1 1881 CDS 100% 13.200 9.240 N TRIM55 n/a
2 TRCN0000416802 GTCACTAACAAGTGGCAAATG pLKO_005 2901 3UTR 100% 10.800 7.560 N TRIM55 n/a
3 TRCN0000034011 CAGCACAACCTGTGTAGGAAA pLKO.1 1378 CDS 100% 4.950 3.465 N TRIM55 n/a
4 TRCN0000034013 CTATGAGAACATGAACCACTT pLKO.1 2160 CDS 100% 4.050 2.835 N TRIM55 n/a
5 TRCN0000425085 TTTATGGATGAGCCAGAAATG pLKO_005 2053 CDS 100% 10.800 6.480 N TRIM55 n/a
6 TRCN0000093082 GAAGATGAAGATGAAGAAGAA pLKO.1 2236 CDS 100% 4.950 2.475 Y Gm5518 n/a
Download CSV

shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript XM_011517616.2, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

Download CSV

All ORF constructs matching this transcript

Clone ID DNA Barcode Vector Sequenced %[?] Nuc. Match %[?] Prot. Match %[?] Epitope Tag Match Diffs[?] Addgene[?]
1 ccsbBroadEn_04413 pDONR223 100% 100% 100% None n/a
2 ccsbBroad304_04413 pLX_304 0% 100% 100% V5 n/a
3 TRCN0000473514 CAGTGGGAGGCAACCACGCAGACC pLX_317 36.4% 100% 100% V5 n/a
Download CSV