Transcript: Human XM_011518609.1

PREDICTED: Homo sapiens annexin A1 (ANXA1), transcript variant X2, mRNA.

Source:
NCBI, updated 2019-09-08
Taxon:
Homo sapiens (human)
Gene:
ANXA1 (301)
Length:
1462
CDS:
136..1176

Additional Resources:

NCBI RefSeq record:
XM_011518609.1
NBCI Gene record:
ANXA1 (301)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Human XM_011518609.1, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Human Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000308208 CATAAGGCCATAATGGTTAAA pLKO_005 289 CDS 100% 13.200 18.480 N ANXA1 n/a
2 TRCN0000296381 CTATGATCAGAAGACTTTAAT pLKO_005 1199 3UTR 100% 15.000 10.500 N ANXA1 n/a
3 TRCN0000296320 AGGTGTTGGAACTCGCCATAA pLKO_005 996 CDS 100% 10.800 7.560 N ANXA1 n/a
4 TRCN0000056100 GCAACCATCATTGACATTCTA pLKO.1 322 CDS 100% 5.625 3.938 N ANXA1 n/a
5 TRCN0000056099 GCATTCTATCAGAAGATGTAT pLKO.1 1072 CDS 100% 5.625 3.938 N ANXA1 n/a
6 TRCN0000289716 GCATTCTATCAGAAGATGTAT pLKO_005 1072 CDS 100% 5.625 3.938 N ANXA1 n/a
7 TRCN0000056101 CCAGCGCAATTTGATGCTGAT pLKO.1 478 CDS 100% 4.050 2.835 N ANXA1 n/a
8 TRCN0000056098 GCCTTGTATGAAGCAGGAGAA pLKO.1 748 CDS 100% 4.050 2.835 N ANXA1 n/a
9 TRCN0000289778 GCCTTGTATGAAGCAGGAGAA pLKO_005 748 CDS 100% 4.050 2.835 N ANXA1 n/a
10 TRCN0000382247 GAGATCTGGCCAAAGACATAA pLKO_005 620 CDS 100% 13.200 7.920 N ANXA1 n/a
11 TRCN0000109727 GCAACCATCATTGACATTCTT pLKO.1 322 CDS 100% 5.625 3.938 N Anxa1 n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript XM_011518609.1, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

Clone ID DNA Barcode Vector Sequenced %[?] Nuc. Match %[?] Prot. Match %[?] Epitope Tag Match Diffs[?] Addgene[?]
1 ccsbBroadEn_05821 pDONR223 100% 100% 100% None n/a
2 ccsbBroad304_05821 pLX_304 0% 100% 100% V5 n/a
3 TRCN0000479447 GCCACAATTCTAGTGTGCTGTACT pLX_317 35.8% 100% 100% V5 n/a
4 ccsbBroadEn_05822 pDONR223 100% 99.9% 100% None 327A>G n/a
5 ccsbBroad304_05822 pLX_304 0% 99.9% 100% V5 327A>G n/a
6 TRCN0000473840 GCGGGAGGACGTCTCCATTAACTA pLX_317 41% 99.9% 100% V5 327A>G n/a
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