Transcript: Human XM_011519067.1

PREDICTED: Homo sapiens actin related protein 2/3 complex subunit 5 like (ARPC5L), transcript variant X1, mRNA.

Source:
NCBI, updated 2019-09-08
Taxon:
Homo sapiens (human)
Gene:
ARPC5L (81873)
Length:
1653
CDS:
555..860

Additional Resources:

NCBI RefSeq record:
XM_011519067.1
NBCI Gene record:
ARPC5L (81873)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Human XM_011519067.1, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Human Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000150194 GCGTTGACTTGTTAATGAAGT pLKO.1 709 CDS 100% 4.950 6.930 N ARPC5L n/a
2 TRCN0000312457 GCGTTGACTTGTTAATGAAGT pLKO_005 709 CDS 100% 4.950 6.930 N ARPC5L n/a
3 TRCN0000100311 GCTCCATTATAAGAGTTCTTA pLKO.1 820 CDS 100% 5.625 3.938 N Arpc5l n/a
4 TRCN0000146953 CTTACAGCAAGAAAGACTGTT pLKO.1 837 CDS 100% 4.950 3.465 N ARPC5L n/a
5 TRCN0000147550 GATCTGATAGTCTATGCCTTT pLKO.1 1047 3UTR 100% 4.050 2.835 N ARPC5L n/a
6 TRCN0000312407 GATCTGATAGTCTATGCCTTT pLKO_005 1047 3UTR 100% 4.050 2.835 N ARPC5L n/a
7 TRCN0000147584 GTCTGTTTCCTAAATCCTGTT pLKO.1 1023 3UTR 100% 4.050 2.835 N ARPC5L n/a
8 TRCN0000312406 GTCTGTTTCCTAAATCCTGTT pLKO_005 1023 3UTR 100% 4.050 2.835 N ARPC5L n/a
9 TRCN0000147583 GAAAGTGCTCACAAACTTCAA pLKO.1 644 CDS 100% 4.950 2.970 N ARPC5L n/a
10 TRCN0000312405 GAAAGTGCTCACAAACTTCAA pLKO_005 644 CDS 100% 4.950 2.970 N ARPC5L n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript XM_011519067.1, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

No results found.