Transcript: Human XM_011522484.3

PREDICTED: Homo sapiens class II major histocompatibility complex transactivator (CIITA), transcript variant X2, mRNA.

Source:
NCBI, updated 2019-09-08
Taxon:
Homo sapiens (human)
Gene:
CIITA (4261)
Length:
5663
CDS:
18..3707

Additional Resources:

NCBI RefSeq record:
XM_011522484.3
NBCI Gene record:
CIITA (4261)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Human XM_011522484.3, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Human Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000230866 CATACGTGATGCGCTACTTTG pLKO_005 2041 CDS 100% 10.800 15.120 N CIITA n/a
2 TRCN0000019072 GCTCAGGCTAAGCTTGTACAA pLKO.1 3452 CDS 100% 4.950 6.930 N CIITA n/a
3 TRCN0000019073 GCTTATGCCAATATCGCGGAA pLKO.1 591 CDS 100% 2.160 3.024 N CIITA n/a
4 TRCN0000230865 AGGGCCTGAGCAAGGACATTT pLKO_005 646 CDS 100% 13.200 9.240 N CIITA n/a
5 TRCN0000218883 TCAGGCTAAGCTTGTACAATA pLKO_005 3454 CDS 100% 13.200 9.240 N CIITA n/a
6 TRCN0000230867 ACAGCTAATGGGACACTAATG pLKO_005 4609 3UTR 100% 10.800 7.560 N CIITA n/a
7 TRCN0000230864 GGCTACCTGGAGCTTCTTAAC pLKO_005 408 CDS 100% 10.800 7.560 N CIITA n/a
8 TRCN0000019070 GCATACGTGATGCGCTACTTT pLKO.1 2040 CDS 100% 5.625 3.938 N CIITA n/a
9 TRCN0000019071 CGCAGACATCAAAGTACCCTA pLKO.1 2319 CDS 100% 2.640 1.848 N CIITA n/a
10 TRCN0000155836 CCCAAAGTGCTGGGATTACAA pLKO.1 4342 3UTR 100% 5.625 2.813 Y KLHL30 n/a
11 TRCN0000086450 GCAGAGGAGAAGTTCACCATT pLKO.1 3045 CDS 100% 4.950 2.970 N Ciita n/a
12 TRCN0000141025 CCCAAAGTGCTGGGATTACTT pLKO.1 4342 3UTR 100% 5.625 2.813 Y EID2B n/a
13 TRCN0000178741 CACACACATACACACACACAA pLKO.1 5559 3UTR 100% 4.950 2.475 Y Cstad n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript XM_011522484.3, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

No results found.