Transcript: Human XM_011523830.2

PREDICTED: Homo sapiens acyl-CoA dehydrogenase very long chain (ACADVL), transcript variant X4, mRNA.

Source:
NCBI, updated 2019-09-08
Taxon:
Homo sapiens (human)
Gene:
ACADVL (37)
Length:
2094
CDS:
60..1925

Additional Resources:

NCBI RefSeq record:
XM_011523830.2
NBCI Gene record:
ACADVL (37)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Human XM_011523830.2, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Human Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000245177 CGGTAGATCATGCCACTAATC pLKO_005 1135 CDS 100% 10.800 15.120 N ACADVL n/a
2 TRCN0000245178 TTCGCATCTTCCGGATCTTTG pLKO_005 1423 CDS 100% 10.800 15.120 N ACADVL n/a
3 TRCN0000221898 GCCACTAATCGTACCCAGTTT pLKO.1 1146 CDS 100% 4.950 6.930 N ACADVL n/a
4 TRCN0000221900 CAAGGCGGAATCTAAGTCCTT pLKO.1 257 CDS 100% 2.640 3.696 N ACADVL n/a
5 TRCN0000221896 GCAGTATGTAACTGAGTCCAT pLKO.1 1226 CDS 100% 2.640 3.696 N ACADVL n/a
6 TRCN0000245175 CAGACATCTTCACGGTCTTTG pLKO_005 826 CDS 100% 10.800 7.560 N ACADVL n/a
7 TRCN0000221897 GCAGACATCTTCACGGTCTTT pLKO.1 825 CDS 100% 4.950 3.465 N ACADVL n/a
8 TRCN0000245179 AGTTATGTGCCTTCCCTCAAG pLKO_005 1950 3UTR 100% 4.050 2.835 N ACADVL n/a
9 TRCN0000221899 GAGGTGTTCTTTGATGGAGTA pLKO.1 984 CDS 100% 4.050 2.835 N ACADVL n/a
10 TRCN0000245176 GTACCATGAGAGGCATCATTG pLKO_005 1108 CDS 100% 0.000 0.000 N ACADVL n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript XM_011523830.2, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

Clone ID DNA Barcode Vector Sequenced %[?] Nuc. Match %[?] Prot. Match %[?] Epitope Tag Match Diffs[?] Addgene[?]
1 ccsbBroadEn_00007 pDONR223 100% 94.8% 91.3% None 1433_1434ins98;1506_1507insGGCA n/a
2 ccsbBroad304_00007 pLX_304 0% 94.8% 91.3% V5 1433_1434ins98;1506_1507insGGCA n/a
3 TRCN0000479329 GTGTCCAAAATTAAGTGTATACCT pLX_317 20.9% 94.8% 91.3% V5 1433_1434ins98;1506_1507insGGCA n/a
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