Transcript: Human XM_011528069.2

PREDICTED: Homo sapiens acid phosphatase 5, tartrate resistant (ACP5), transcript variant X2, mRNA.

Source:
NCBI, updated 2019-09-08
Taxon:
Homo sapiens (human)
Gene:
ACP5 (54)
Length:
1733
CDS:
406..1383

Additional Resources:

NCBI RefSeq record:
XM_011528069.2
NBCI Gene record:
ACP5 (54)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Human XM_011528069.2, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Human Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000359476 CTCGGGCAAGTCCCTCTTTAA pLKO_005 1332 CDS 100% 13.200 9.240 N ACP5 n/a
2 TRCN0000368607 GCAATGTCTCTGCCCAGATTG pLKO_005 749 CDS 100% 10.800 7.560 N ACP5 n/a
3 TRCN0000050563 CCAGATTGCATACTCTAAGAT pLKO.1 762 CDS 100% 5.625 3.938 N ACP5 n/a
4 TRCN0000050564 GCAGACTTCATCCTGTCTCTA pLKO.1 592 CDS 100% 4.950 3.465 N ACP5 n/a
5 TRCN0000050566 CCTCGGGCAAGTCCCTCTTTA pLKO.1 1331 CDS 100% 4.400 3.080 N ACP5 n/a
6 TRCN0000050567 CACAGTGACACTATGTGGCAA pLKO.1 873 CDS 100% 2.640 1.848 N ACP5 n/a
7 TRCN0000359399 AGTACCTGCAAGATGAGAATG pLKO_005 1139 CDS 100% 10.800 6.480 N ACP5 n/a
8 TRCN0000359477 GAGACCTTTGAGGACGTATTC pLKO_005 667 CDS 100% 10.800 6.480 N ACP5 n/a
9 TRCN0000050565 CAGTACCTGCAAGATGAGAAT pLKO.1 1138 CDS 100% 4.950 2.970 N ACP5 n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript XM_011528069.2, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

Clone ID DNA Barcode Vector Sequenced %[?] Nuc. Match %[?] Prot. Match %[?] Epitope Tag Match Diffs[?] Addgene[?]
1 ccsbBroadEn_00012 pDONR223 100% 100% 100% None n/a
2 ccsbBroad304_00012 pLX_304 0% 100% 100% V5 n/a
3 TRCN0000471125 CCTGACGCATTCCAATTTCCGTCC pLX_317 41.3% 100% 100% V5 n/a
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