Transcript: Human XM_011528178.3

PREDICTED: Homo sapiens small glutamine rich tetratricopeptide repeat containing alpha (SGTA), transcript variant X1, mRNA.

Source:
NCBI, updated 2019-09-08
Taxon:
Homo sapiens (human)
Gene:
SGTA (6449)
Length:
2454
CDS:
287..1228

Additional Resources:

NCBI RefSeq record:
XM_011528178.3
NBCI Gene record:
SGTA (6449)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Human XM_011528178.3, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Human Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000273179 CTTTGAAGCTGCCGTGCATTT pLKO_005 604 CDS 100% 10.800 15.120 N SGTA n/a
2 TRCN0000007191 CGTGTATCGTAGGTAGCAGTA pLKO.1 2323 3UTR 100% 4.050 5.670 N SGTA n/a
3 TRCN0000273182 CGTGTATCGTAGGTAGCAGTA pLKO_005 2323 3UTR 100% 4.050 5.670 N SGTA n/a
4 TRCN0000007193 GCTTCGAACCTAATGAACAAT pLKO.1 986 CDS 100% 5.625 4.500 N SGTA n/a
5 TRCN0000284934 GCTTCGAACCTAATGAACAAT pLKO_005 986 CDS 100% 5.625 4.500 N SGTA n/a
6 TRCN0000273108 AGCAGAACCCAGAGTTGATAG pLKO_005 1143 CDS 100% 10.800 7.560 N SGTA n/a
7 TRCN0000007192 CGAAGGAAACGAGCAGATGAA pLKO.1 574 CDS 100% 4.950 3.465 N SGTA n/a
8 TRCN0000007194 GCCGTCTATTTCTGCAACAGA pLKO.1 659 CDS 100% 3.000 2.100 N SGTA n/a
9 TRCN0000007195 CCTCAGACTCTGCCGGAGATA pLKO.1 449 CDS 100% 1.650 1.155 N SGTA n/a
10 TRCN0000273180 CCTCAGACTCTGCCGGAGATA pLKO_005 449 CDS 100% 1.650 1.155 N SGTA n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript XM_011528178.3, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

Clone ID DNA Barcode Vector Sequenced %[?] Nuc. Match %[?] Prot. Match %[?] Epitope Tag Match Diffs[?] Addgene[?]
1 ccsbBroadEn_01528 pDONR223 100% 100% 100% None n/a
2 ccsbBroad304_01528 pLX_304 0% 100% 100% V5 n/a
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