Transcript: Human XM_011529096.2

PREDICTED: Homo sapiens sorting nexin family member 21 (SNX21), transcript variant X3, mRNA.

Source:
NCBI, updated 2019-09-08
Taxon:
Homo sapiens (human)
Gene:
SNX21 (90203)
Length:
1207
CDS:
503..1066

Additional Resources:

NCBI RefSeq record:
XM_011529096.2
NBCI Gene record:
SNX21 (90203)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Human XM_011529096.2, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Human Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000379513 ACGTCAGGAGAAGACGCAGAA pLKO_005 773 CDS 100% 4.050 2.835 N SNX21 n/a
2 TRCN0000380369 AGTCCAGAGGCCGAGCAGTTT pLKO_005 599 CDS 100% 1.650 1.155 N SNX21 n/a
3 TRCN0000073335 GCTGCAGGATTTCTGGAAGAA pLKO.1 844 CDS 100% 4.950 2.970 N SNX21 n/a
4 TRCN0000164801 CCTCCCAAAGTACTGGGATTA pLKO.1 1012 CDS 100% 1.080 0.540 Y MAPKAPK5-AS1 n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript XM_011529096.2, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

Clone ID DNA Barcode Vector Sequenced %[?] Nuc. Match %[?] Prot. Match %[?] Epitope Tag Match Diffs[?] Addgene[?]
1 ccsbBroadEn_09290 pDONR223 100% 83.3% 73.7% None (many diffs) n/a
2 ccsbBroad304_09290 pLX_304 0% 83.3% 73.7% V5 (many diffs) n/a
3 TRCN0000466796 CTTACAATAACTAAGCAGCCCCCG pLX_317 69.2% 83.3% 73.7% V5 (many diffs) n/a
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