Transcript: Human XM_011529145.3

PREDICTED: Homo sapiens ring finger protein 24 (RNF24), transcript variant X1, mRNA.

Source:
NCBI, updated 2019-09-08
Taxon:
Homo sapiens (human)
Gene:
RNF24 (11237)
Length:
4851
CDS:
437..946

Additional Resources:

NCBI RefSeq record:
XM_011529145.3
NBCI Gene record:
RNF24 (11237)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Human XM_011529145.3, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Human Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000041159 GCCTACAAACAGGTTATATTA pLKO.1 674 CDS 100% 15.000 21.000 N Rnf24 n/a
2 TRCN0000004255 GTTTACTCTTCTGTTGCTACT pLKO.1 615 CDS 100% 4.050 5.670 N RNF24 n/a
3 TRCN0000004257 GAATCTGCCTCTCAACATATA pLKO.1 553 CDS 100% 13.200 9.240 N RNF24 n/a
4 TRCN0000417261 ATGTCAAGCAGGAGGGTAAAG pLKO_005 1251 3UTR 100% 10.800 7.560 N RNF24 n/a
5 TRCN0000434928 TCATGAGGGTCTCTTACTAAC pLKO_005 1196 3UTR 100% 10.800 7.560 N RNF24 n/a
6 TRCN0000004256 CTTATCATTTCCCTCTCCTAT pLKO.1 1594 3UTR 100% 4.950 3.465 N RNF24 n/a
7 TRCN0000004258 GTACTGCTATATTTGTCTTCA pLKO.1 588 CDS 100% 4.950 3.465 N RNF24 n/a
8 TRCN0000004254 CTGGAGGTTCGTAAAGTGTGT pLKO.1 824 CDS 100% 2.640 1.848 N RNF24 n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript XM_011529145.3, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

Clone ID DNA Barcode Vector Sequenced %[?] Nuc. Match %[?] Prot. Match %[?] Epitope Tag Match Diffs[?] Addgene[?]
1 ccsbBroadEn_02655 pDONR223 100% 87.5% 87.5% None 1_63del n/a
2 ccsbBroad304_02655 pLX_304 0% 87.5% 87.5% V5 1_63del n/a
3 TRCN0000472407 GGCTATGTTATACTTACGATCTGT pLX_317 89.8% 87.5% 87.5% V5 1_63del n/a
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