Transcript: Human XM_011530680.2

PREDICTED: Homo sapiens mitogen-activated protein kinase 8 interacting protein 2 (MAPK8IP2), transcript variant X2, mRNA.

Source:
NCBI, updated 2019-09-08
Taxon:
Homo sapiens (human)
Gene:
MAPK8IP2 (23542)
Length:
5586
CDS:
24..2387

Additional Resources:

NCBI RefSeq record:
XM_011530680.2
NBCI Gene record:
MAPK8IP2 (23542)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Human XM_011530680.2, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Human Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000431685 GTTTGAGATGATCGATGACAA pLKO_005 263 CDS 100% 4.950 6.930 N MAPK8IP2 n/a
2 TRCN0000037989 CCTAAACAACAACGGAGGCTT pLKO.1 476 CDS 100% 2.640 3.696 N MAPK8IP2 n/a
3 TRCN0000433797 TATCCTCTATTCTTCACTTTG pLKO_005 2701 3UTR 100% 10.800 7.560 N MAPK8IP2 n/a
4 TRCN0000037993 CAAGAAGTTCCTCAATGTCTT pLKO.1 1631 CDS 100% 4.950 3.465 N MAPK8IP2 n/a
5 TRCN0000037990 CAGCCATTTCTTCCAGATGAA pLKO.1 2156 CDS 100% 4.950 3.465 N MAPK8IP2 n/a
6 TRCN0000037991 GAAGAATTTGACGACGAAGAT pLKO.1 111 CDS 100% 4.950 3.465 N MAPK8IP2 n/a
7 TRCN0000037992 CCAGATGAAGAACATCTCCTT pLKO.1 2168 CDS 100% 0.264 0.185 N MAPK8IP2 n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript XM_011530680.2, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

Clone ID DNA Barcode Vector Sequenced %[?] Nuc. Match %[?] Prot. Match %[?] Epitope Tag Match Diffs[?] Addgene[?]
1 ccsbBroadEn_11744 pDONR223 100% 56.2% 56.2% None 265_1296del n/a
2 ccsbBroad304_11744 pLX_304 0% 56.2% 56.2% V5 265_1296del n/a
3 TRCN0000471059 AACAGATTTCATCTCAGGATACAG pLX_317 27.3% 56.2% 56.2% V5 265_1296del n/a
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