Transcript: Human XM_011535019.3

PREDICTED: Homo sapiens microtubule associated scaffold protein 2 (MTUS2), transcript variant X1, mRNA.

Source:
NCBI, updated 2019-09-08
Taxon:
Homo sapiens (human)
Gene:
MTUS2 (23281)
Length:
7490
CDS:
550..4749

Additional Resources:

NCBI RefSeq record:
XM_011535019.3
NBCI Gene record:
MTUS2 (23281)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Human XM_011535019.3, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Human Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000147784 GCACCGATATGTGTGTATATT pLKO.1 5089 3UTR 100% 15.000 21.000 N MTUS2 n/a
2 TRCN0000130434 GCAAAGTGCGAGAAACTACAA pLKO.1 3835 CDS 100% 4.950 6.930 N MTUS2 n/a
3 TRCN0000149753 GCTGTCAATCGAACTTGCAAA pLKO.1 3786 CDS 100% 4.950 6.930 N MTUS2 n/a
4 TRCN0000129311 CGATTAAACTCTCGCCCACAT pLKO.1 4661 CDS 100% 4.050 5.670 N MTUS2 n/a
5 TRCN0000129063 GAAGACCTCAAAGCAAGGATT pLKO.1 4492 CDS 100% 4.950 3.465 N MTUS2 n/a
6 TRCN0000129310 CGAACCAATGAAGAGCTGCTT pLKO.1 4609 CDS 100% 2.640 1.848 N MTUS2 n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript XM_011535019.3, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

Clone ID DNA Barcode Vector Sequenced %[?] Nuc. Match %[?] Prot. Match %[?] Epitope Tag Match Diffs[?] Addgene[?]
1 ccsbBroadEn_02744 pDONR223 100% 24.3% 23.7% None (many diffs) n/a
2 ccsbBroad304_02744 pLX_304 0% 24.3% 23.7% V5 (many diffs) n/a
3 TRCN0000474380 TAGAGCGGAGGTTATATGCCAATG pLX_317 45% 24.3% 23.7% V5 (many diffs) n/a
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