Transcript: Human XM_011538005.2

PREDICTED: Homo sapiens D-amino acid oxidase (DAO), transcript variant X1, mRNA.

Source:
NCBI, updated 2019-09-08
Taxon:
Homo sapiens (human)
Gene:
DAO (1610)
Length:
1795
CDS:
244..1287

Additional Resources:

NCBI RefSeq record:
XM_011538005.2
NBCI Gene record:
DAO (1610)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Human XM_011538005.2, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Human Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000046264 CGGCTAGAAAGAGAACAGCTT pLKO.1 1111 CDS 100% 2.640 2.112 N DAO n/a
2 TRCN0000046263 GCTGGATATGTTCCCAGATTA pLKO.1 606 CDS 100% 13.200 9.240 N DAO n/a
3 TRCN0000417528 GGGAAACTGGAGTGAACTAAA pLKO_005 975 CDS 100% 13.200 9.240 N DAO n/a
4 TRCN0000415637 TGGTTCCACACAAGCCTAATT pLKO_005 637 CDS 100% 13.200 9.240 N DAO n/a
5 TRCN0000414795 ATCAATGTGCTCCTTCATAAG pLKO_005 1346 3UTR 100% 10.800 7.560 N DAO n/a
6 TRCN0000431779 GTGGCTGACTGAAAGGTTAAC pLKO_005 681 CDS 100% 10.800 7.560 N DAO n/a
7 TRCN0000046267 GTGAAGTTCTTCCAGCGGAAA pLKO.1 712 CDS 100% 4.050 2.835 N DAO n/a
8 TRCN0000046266 CCTTGGATGAAGCACTTCATT pLKO.1 865 CDS 100% 0.563 0.394 N DAO n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript XM_011538005.2, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

Clone ID DNA Barcode Vector Sequenced %[?] Nuc. Match %[?] Prot. Match %[?] Epitope Tag Match Diffs[?] Addgene[?]
1 ccsbBroadEn_00419 pDONR223 100% 100% 100% None n/a
2 ccsbBroad304_00419 pLX_304 0% 100% 100% V5 n/a
3 TRCN0000466527 TCGTTAATGTCTATTGATGGGTTT pLX_317 25.7% 100% 100% V5 n/a
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