Transcript: Human XM_011542052.2

PREDICTED: Homo sapiens T-box transcription factor 15 (TBX15), transcript variant X2, mRNA.

Source:
NCBI, updated 2019-09-08
Taxon:
Homo sapiens (human)
Gene:
TBX15 (6913)
Length:
2993
CDS:
345..1307

Additional Resources:

NCBI RefSeq record:
XM_011542052.2
NBCI Gene record:
TBX15 (6913)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Human XM_011542052.2, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Human Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000018027 CACAACCCTTACAACCTGTAT pLKO.1 1032 CDS 100% 4.950 3.960 N TBX15 n/a
2 TRCN0000084361 GTAATCTAAACCTCTCTGATT pLKO.1 673 CDS 100% 4.950 3.465 N Tbx15 n/a
3 TRCN0000333929 GTAATCTAAACCTCTCTGATT pLKO_005 673 CDS 100% 4.950 3.465 N Tbx15 n/a
4 TRCN0000018025 CCATCCCTGATCTCAGGAATA pLKO.1 828 CDS 100% 10.800 6.480 N TBX15 n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript XM_011542052.2, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

Clone ID DNA Barcode Vector Sequenced %[?] Nuc. Match %[?] Prot. Match %[?] Epitope Tag Match Diffs[?] Addgene[?]
1 ccsbBroadEn_07035 pDONR223 100% 54.1% 54% None 0_1ins627;80_178del;864C>T n/a
2 TRCN0000468373 TTTGGCTTTTTCACCGCCTACTGA pLX_317 26.9% 54.1% 54% V5 0_1ins627;80_178del;864C>T n/a
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