Transcript: Human XM_011543453.3

PREDICTED: Homo sapiens proline rich 16 (PRR16), transcript variant X2, mRNA.

Source:
NCBI, updated 2019-09-08
Taxon:
Homo sapiens (human)
Gene:
PRR16 (51334)
Length:
1827
CDS:
450..1217

Additional Resources:

NCBI RefSeq record:
XM_011543453.3
NBCI Gene record:
PRR16 (51334)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Human XM_011543453.3, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Human Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000123215 CGAGAACGAGTTCGGTTTAAT pLKO.1 906 CDS 100% 15.000 21.000 N PRR16 n/a
2 TRCN0000271253 GGCTAATGCACCGCTTATTAA pLKO_005 596 CDS 100% 15.000 21.000 N PRR16 n/a
3 TRCN0000271251 ACCGTGTGATGTATGCCATTA pLKO_005 1209 CDS 100% 10.800 15.120 N PRR16 n/a
4 TRCN0000271317 ACCTGCAGATTTCACCTATTT pLKO_005 1485 3UTR 100% 13.200 9.240 N PRR16 n/a
5 TRCN0000271252 TCCAACTGCCAATCCTGTAAA pLKO_005 725 CDS 100% 13.200 9.240 N PRR16 n/a
6 TRCN0000123218 TGACTGTGATACCCGGTATAA pLKO.1 956 CDS 100% 13.200 9.240 N PRR16 n/a
7 TRCN0000271254 TGCTGCATACCCAACAGTAAC pLKO_005 816 CDS 100% 10.800 7.560 N PRR16 n/a
8 TRCN0000123214 CCTGGTAAGTATGCAGCACAT pLKO.1 1352 3UTR 100% 4.050 2.835 N PRR16 n/a
9 TRCN0000123216 CTTCTACGAAATGGAGGCTTA pLKO.1 759 CDS 100% 4.050 2.835 N PRR16 n/a
10 TRCN0000123217 CCTTCTACGAAATGGAGGCTT pLKO.1 758 CDS 100% 2.640 1.848 N PRR16 n/a
Download CSV

shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript XM_011543453.3, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

Download CSV

All ORF constructs matching this transcript

Clone ID DNA Barcode Vector Sequenced %[?] Nuc. Match %[?] Prot. Match %[?] Epitope Tag Match Diffs[?] Addgene[?]
1 ccsbBroadEn_11978 pDONR223 100% 91.5% 91.3% None 1_63del;181C>A;183G>A n/a
2 ccsbBroad304_11978 pLX_304 0% 91.5% 91.3% V5 1_63del;181C>A;183G>A n/a
3 TRCN0000465699 CAGTTAAAACCCGCCCAATTCCAA pLX_317 24% 91.5% 91.3% V5 1_63del;181C>A;183G>A n/a
Download CSV