Transcript: Human XM_011544285.3

PREDICTED: Homo sapiens tripartite motif containing 11 (TRIM11), transcript variant X2, mRNA.

Source:
NCBI, updated 2019-09-08
Taxon:
Homo sapiens (human)
Gene:
TRIM11 (81559)
Length:
2292
CDS:
84..1259

Additional Resources:

NCBI RefSeq record:
XM_011544285.3
NBCI Gene record:
TRIM11 (81559)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Human XM_011544285.3, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Human Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000430357 AGAATCCAGGGTTCACCTAAG pLKO_005 1592 3UTR 100% 6.000 8.400 N TRIM11 n/a
2 TRCN0000438010 ACTTCACGGATCCGGTGATGA pLKO_005 148 CDS 100% 4.950 6.930 N TRIM11 n/a
3 TRCN0000435856 AGCCACCGGGTGCCACTTAAT pLKO_005 1480 3UTR 100% 4.400 6.160 N TRIM11 n/a
4 TRCN0000033959 GCTATTCATCTTTCCCGAGAT pLKO.1 1127 CDS 100% 4.050 5.670 N TRIM11 n/a
5 TRCN0000033962 AGCTATTACAATTCCTCGGAA pLKO.1 1005 CDS 100% 2.640 3.696 N TRIM11 n/a
6 TRCN0000033963 CGATGGGTCACTGCTATTCAT pLKO.1 1115 CDS 100% 5.625 4.500 N TRIM11 n/a
7 TRCN0000033960 GCTTGCTAAGATGGCCGAGAT pLKO.1 293 CDS 100% 4.050 2.835 N TRIM11 n/a
8 TRCN0000033961 CCTGAGCTGATCCTGTCTGAA pLKO.1 744 CDS 100% 4.950 2.970 N TRIM11 n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript XM_011544285.3, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

Clone ID DNA Barcode Vector Sequenced %[?] Nuc. Match %[?] Prot. Match %[?] Epitope Tag Match Diffs[?] Addgene[?]
1 ccsbBroadEn_12719 pDONR223 100% 51.6% 51.6% None 1_567del n/a
2 ccsbBroad304_12719 pLX_304 0% 51.6% 51.6% V5 1_567del n/a
3 TRCN0000474265 ATACCAGTTGTTGACACCGACACC pLX_317 24.2% 51.6% 51.6% V5 1_567del n/a
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