Transcript: Human XM_011544741.1

PREDICTED: Homo sapiens phospholipase A and acyltransferase 3 (PLAAT3), transcript variant X1, mRNA.

Source:
NCBI, updated 2019-09-08
Taxon:
Homo sapiens (human)
Gene:
PLAAT3 (11145)
Length:
984
CDS:
281..814

Additional Resources:

NCBI RefSeq record:
XM_011544741.1
NBCI Gene record:
PLAAT3 (11145)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Human XM_011544741.1, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Human Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000157693 CTTTGTGAATGAGCTGCGCTA pLKO.1 670 CDS 100% 2.160 3.024 N PLAAT3 n/a
2 TRCN0000328827 ACAGACACTGGGCCATCTATG pLKO_005 387 CDS 100% 10.800 8.640 N Pla2g16 n/a
3 TRCN0000322989 TTGTGAATGAGCTGCGCTATG pLKO_005 672 CDS 100% 6.000 4.800 N PLAAT3 n/a
4 TRCN0000151565 GTCAGCGATGACTTTATACAT pLKO.1 832 3UTR 100% 5.625 4.500 N PLAAT3 n/a
5 TRCN0000153257 GAGCCTTATTGGAGTCATGTT pLKO.1 766 CDS 100% 4.950 3.960 N PLAAT3 n/a
6 TRCN0000157450 GAGTGACAAGTACCAGGTCAA pLKO.1 535 CDS 100% 4.050 3.240 N PLAAT3 n/a
7 TRCN0000323067 GTGGATTTCATTGTGATTTAT pLKO_005 894 3UTR 100% 15.000 10.500 N PLAAT3 n/a
8 TRCN0000322991 TCTATGTTGGCGATGGATATG pLKO_005 402 CDS 100% 10.800 7.560 N PLAAT3 n/a
9 TRCN0000152448 CATGAGCCTTATTGGAGTCAT pLKO.1 763 CDS 100% 4.950 3.465 N PLAAT3 n/a
10 TRCN0000323063 CATGAGCCTTATTGGAGTCAT pLKO_005 763 CDS 100% 4.950 3.465 N PLAAT3 n/a
11 TRCN0000322990 GACAAGTACCAGGTCAACAAC pLKO_005 539 CDS 100% 4.950 3.465 N PLAAT3 n/a
12 TRCN0000158115 CCATCTATGTTGGCGATGGAT pLKO.1 399 CDS 100% 0.300 0.210 N PLAAT3 n/a
13 TRCN0000157764 CCAGGTCAGAGATGTCATCAT pLKO.1 709 CDS 100% 4.950 2.970 N PLAAT3 n/a
14 TRCN0000157602 GAGATGTCATCATCGCTGCAA pLKO.1 717 CDS 100% 2.640 1.584 N PLAAT3 n/a
15 TRCN0000156274 CCTGGAGACCTGATTGAGATT pLKO.1 353 CDS 100% 4.950 2.475 Y PLAAT3 n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript XM_011544741.1, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

Clone ID DNA Barcode Vector Sequenced %[?] Nuc. Match %[?] Prot. Match %[?] Epitope Tag Match Diffs[?] Addgene[?]
1 ccsbBroadEn_02628 pDONR223 100% 87.4% 89.2% None 1_56del;57_58insTGCGTGCGCCC;60A>T n/a
2 ccsbBroad304_02628 pLX_304 0% 87.4% 89.2% V5 1_56del;57_58insTGCGTGCGCCC;60A>T n/a
3 TRCN0000472255 TAGAAGTGTAACCCAACCAATGAT pLX_317 75.8% 87.4% 89.2% V5 1_56del;57_58insTGCGTGCGCCC;60A>T n/a
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