Transcript: Human XM_011545134.3

PREDICTED: Homo sapiens protein phosphatase 2 regulatory subunit B'beta (PPP2R5B), transcript variant X3, mRNA.

Source:
NCBI, updated 2019-09-08
Taxon:
Homo sapiens (human)
Gene:
PPP2R5B (5526)
Length:
2355
CDS:
486..1721

Additional Resources:

NCBI RefSeq record:
XM_011545134.3
NBCI Gene record:
PPP2R5B (5526)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Human XM_011545134.3, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Human Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000380942 TCTTCCTCCGGTTCATCTATG pLKO_005 940 CDS 100% 10.800 15.120 N PPP2R5B n/a
2 TRCN0000039936 CCTCCGGTTCATCTATGAATT pLKO.1 944 CDS 100% 0.000 0.000 N PPP2R5B n/a
3 TRCN0000295884 CCACACCTGCAGCTGGTATAT pLKO_005 714 CDS 100% 13.200 9.240 N PPP2R5B n/a
4 TRCN0000039935 CCGCATGATCTCAGTGAATAT pLKO.1 617 CDS 100% 13.200 9.240 N PPP2R5B n/a
5 TRCN0000306732 CCGCATGATCTCAGTGAATAT pLKO_005 617 CDS 100% 13.200 9.240 N PPP2R5B n/a
6 TRCN0000295829 CTGATGCTCCTGGAGCTATTT pLKO_005 813 CDS 100% 13.200 9.240 N PPP2R5B n/a
7 TRCN0000295828 AGAGCTGTCAGTCCCTCTATC pLKO_005 1753 3UTR 100% 10.800 7.560 N PPP2R5B n/a
8 TRCN0000307976 TCGTATCACTGATCTACAATG pLKO_005 1477 CDS 100% 10.800 7.560 N PPP2R5B n/a
9 TRCN0000080991 GCTCTGTATTTCTGGAACAAT pLKO.1 1356 CDS 100% 5.625 3.938 N Ppp2r5b n/a
10 TRCN0000039937 CCCTGAATTTGACCCTGAAGA pLKO.1 665 CDS 100% 4.950 3.465 N PPP2R5B n/a
11 TRCN0000039934 GCCAAGAGATATGTGGATCAA pLKO.1 783 CDS 100% 4.950 3.465 N PPP2R5B n/a
12 TRCN0000039933 GTTCACAGTAATCATGGTCTA pLKO.1 2284 3UTR 100% 4.050 2.835 N PPP2R5B n/a
13 TRCN0000080989 CCAGACATCATCCGCATGATA pLKO.1 606 CDS 100% 0.563 0.394 N Ppp2r5b n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript XM_011545134.3, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

No results found.