Transcript: Human XM_011545141.1

PREDICTED: Homo sapiens protein phosphatase 6 regulatory subunit 3 (PPP6R3), transcript variant X6, mRNA.

Source:
NCBI, updated 2019-09-08
Taxon:
Homo sapiens (human)
Gene:
PPP6R3 (55291)
Length:
5219
CDS:
384..3002

Additional Resources:

NCBI RefSeq record:
XM_011545141.1
NBCI Gene record:
PPP6R3 (55291)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Human XM_011545141.1, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Human Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000431807 GAGACACGACGACCAACATTT pLKO_005 1212 CDS 100% 13.200 18.480 N PPP6R3 n/a
2 TRCN0000160662 CGAGTATCAGACATCAACTTT pLKO.1 2076 CDS 100% 5.625 7.875 N PPP6R3 n/a
3 TRCN0000160381 CAAGGTGCTAAGTATTCTTAT pLKO.1 758 CDS 100% 13.200 10.560 N PPP6R3 n/a
4 TRCN0000435261 AGATTCTTTAAGGAGTAATTC pLKO_005 2531 CDS 100% 13.200 9.240 N PPP6R3 n/a
5 TRCN0000160661 CCATTCAGCTTGTTCAGTAAA pLKO.1 1268 CDS 100% 13.200 9.240 N PPP6R3 n/a
6 TRCN0000159529 CGAAGATTTAGTCTCATTCAT pLKO.1 545 CDS 100% 5.625 3.938 N PPP6R3 n/a
7 TRCN0000162457 CGCAAGAAGAAGATCGACATT pLKO.1 988 CDS 100% 4.950 3.465 N PPP6R3 n/a
8 TRCN0000164498 CTTCAGTGAATGGCCCTGTAT pLKO.1 2980 CDS 100% 4.950 3.465 N PPP6R3 n/a
9 TRCN0000159679 GAGTTAATGGATGAGGAAGAT pLKO.1 459 CDS 100% 4.950 3.465 N PPP6R3 n/a
10 TRCN0000161015 GAATACTTGAAGCCTGGGAAA pLKO.1 1690 CDS 100% 4.050 2.835 N PPP6R3 n/a
11 TRCN0000161472 GCAGAAAGTACAGACAAGGTA pLKO.1 2679 CDS 100% 3.000 2.100 N PPP6R3 n/a
12 TRCN0000159973 CAAGAAATTATAGAGCAGCTT pLKO.1 1116 CDS 100% 2.640 1.848 N PPP6R3 n/a
13 TRCN0000413749 CCAACTGGTCAGCTAACTTTG pLKO_005 2374 CDS 100% 10.800 6.480 N PPP6R3 n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript XM_011545141.1, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

Clone ID DNA Barcode Vector Sequenced %[?] Nuc. Match %[?] Prot. Match %[?] Epitope Tag Match Diffs[?] Addgene[?]
1 ccsbBroadEn_15896 pDONR223 0% 23% 22.9% None 1_1965del;2399_2416del;2536_2565del n/a
2 ccsbBroad304_15896 pLX_304 0% 23% 22.9% V5 1_1965del;2399_2416del;2536_2565del n/a
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