Construct: ORF ccsbBroad304_15896
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF014450.1_s304c1, BRDN0000399687
- Derived from:
- ccsbBroadEn_15896
- DNA Barcode:
- None
- Epitope Tag:
- V5
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- PPP6R3 (55291)
Vector Information:
- Vector Backbone:
- pLX_304
- Pol II Cassette 1:
- PGK-BlastR
- Pol II Cassette 2:
- CMV-ccsbBroad304_15896
- Selection Marker:
- BlastR
- Visible Reporter:
- n/a
- Epitope Tag:
- V5
Current transcripts matched by this ORF:
Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
---|---|---|---|---|---|---|---|---|
1 | human | 55291 | PPP6R3 | protein phosphatase 6 regul... | NM_001352357.2 | 32.4% | 32.4% | 1_1254del |
2 | human | 55291 | PPP6R3 | protein phosphatase 6 regul... | XM_024448603.1 | 31.9% | 31.9% | 1_1287del |
3 | human | 55291 | PPP6R3 | protein phosphatase 6 regul... | NM_001352369.2 | 30.7% | 30.5% | 1_1341del;1775_1792del |
4 | human | 55291 | PPP6R3 | protein phosphatase 6 regul... | NM_001352347.2 | 30.2% | 30.1% | 1_1341del;1775_1792del;1912_1941del |
5 | human | 55291 | PPP6R3 | protein phosphatase 6 regul... | NM_001352353.2 | 28% | 27.8% | 1_1530del;1964_1981del |
6 | human | 55291 | PPP6R3 | protein phosphatase 6 regul... | NM_001352355.2 | 26.6% | 26.6% | 1_1656del |
7 | human | 55291 | PPP6R3 | protein phosphatase 6 regul... | NM_001352374.2 | 26.4% | 26.3% | 1_1656del;2090_2107del |
8 | human | 55291 | PPP6R3 | protein phosphatase 6 regul... | NM_001352378.2 | 26.4% | 26.3% | 1_1656del;2090_2107del |
9 | human | 55291 | PPP6R3 | protein phosphatase 6 regul... | NM_001352351.2 | 26.2% | 26.2% | 1_1692del |
10 | human | 55291 | PPP6R3 | protein phosphatase 6 regul... | NM_001352361.2 | 25.7% | 25.7% | 1_1743del |
11 | human | 55291 | PPP6R3 | protein phosphatase 6 regul... | NM_001352359.2 | 25.5% | 25.5% | 1_1725del;2278_2307del |
12 | human | 55291 | PPP6R3 | protein phosphatase 6 regul... | NM_001352370.2 | 25.5% | 25.3% | 1_1743del;2177_2194del |
13 | human | 55291 | PPP6R3 | protein phosphatase 6 regul... | XM_017017977.2 | 25.5% | 25.3% | 1_1743del;2177_2194del |
14 | human | 55291 | PPP6R3 | protein phosphatase 6 regul... | NM_018312.5 | 25.3% | 25.3% | 1_1776del |
15 | human | 55291 | PPP6R3 | protein phosphatase 6 regul... | XM_006718624.2 | 25.3% | 25.3% | 1_1776del |
16 | human | 55291 | PPP6R3 | protein phosphatase 6 regul... | XM_024448602.1 | 25.1% | 25% | 1_1743del;2177_2194del;2314_2343del |
17 | human | 55291 | PPP6R3 | protein phosphatase 6 regul... | XM_006718622.3 | 25% | 25% | 1_1776del;2329_2358del |
18 | human | 55291 | PPP6R3 | protein phosphatase 6 regul... | XM_006718623.3 | 25% | 25% | 1_1776del;2329_2358del |
19 | human | 55291 | PPP6R3 | protein phosphatase 6 regul... | NM_001352358.2 | 24.9% | 24.9% | 1_1812del |
20 | human | 55291 | PPP6R3 | protein phosphatase 6 regul... | XM_024448601.1 | 24.9% | 24.9% | 1_1812del |
21 | human | 55291 | PPP6R3 | protein phosphatase 6 regul... | XM_006718621.2 | 24.3% | 24.3% | 1_1878del |
22 | human | 55291 | PPP6R3 | protein phosphatase 6 regul... | NM_001164164.2 | 24.1% | 23.6% | (many diffs) |
23 | human | 55291 | PPP6R3 | protein phosphatase 6 regul... | NM_001164163.2 | 23.8% | 23.8% | 1_1929del |
24 | human | 55291 | PPP6R3 | protein phosphatase 6 regul... | NM_001352363.2 | 23.8% | 23.8% | 1_1929del |
25 | human | 55291 | PPP6R3 | protein phosphatase 6 regul... | NM_001352366.2 | 23.8% | 23.6% | 1_1911del;2345_2362del |
26 | human | 55291 | PPP6R3 | protein phosphatase 6 regul... | XM_017017974.1 | 23.8% | 23.6% | 1_1911del;2345_2362del |
27 | human | 55291 | PPP6R3 | protein phosphatase 6 regul... | NM_001352350.2 | 23.6% | 23.5% | 1_1929del;2363_2380del |
28 | human | 55291 | PPP6R3 | protein phosphatase 6 regul... | NM_001352376.2 | 23.6% | 23.5% | 1_1929del;2363_2380del |
29 | human | 55291 | PPP6R3 | protein phosphatase 6 regul... | NM_001352380.2 | 23.6% | 23.5% | 1_1929del;2363_2380del |
30 | human | 55291 | PPP6R3 | protein phosphatase 6 regul... | NM_001352362.2 | 23.4% | 23.4% | 1_1965del |
31 | human | 55291 | PPP6R3 | protein phosphatase 6 regul... | NM_001352365.2 | 23.4% | 23.4% | 1_1965del |
32 | human | 55291 | PPP6R3 | protein phosphatase 6 regul... | XM_017017969.1 | 23.4% | 23.4% | 1_1965del |
33 | human | 55291 | PPP6R3 | protein phosphatase 6 regul... | NM_001352360.2 | 23.3% | 23.2% | 1_1929del;2363_2380del;2500_2529del |
34 | human | 55291 | PPP6R3 | protein phosphatase 6 regul... | NM_001352373.2 | 23.3% | 23.2% | 1_1929del;2363_2380del;2500_2529del |
35 | human | 55291 | PPP6R3 | protein phosphatase 6 regul... | NM_001352352.2 | 23.3% | 23.2% | 1_1965del;2399_2416del |
36 | human | 55291 | PPP6R3 | protein phosphatase 6 regul... | NM_001352371.2 | 23.3% | 23.2% | 1_1965del;2399_2416del |
37 | human | 55291 | PPP6R3 | protein phosphatase 6 regul... | NM_001164162.2 | 23.1% | 23.1% | 1_1998del |
38 | human | 55291 | PPP6R3 | protein phosphatase 6 regul... | NM_001352348.2 | 23.1% | 23.1% | 1_1998del |
39 | human | 55291 | PPP6R3 | protein phosphatase 6 regul... | XM_006718614.2 | 23.1% | 23.1% | 1_1998del |
40 | human | 55291 | PPP6R3 | protein phosphatase 6 regul... | XM_011545141.1 | 23% | 22.9% | 1_1965del;2399_2416del;2536_2565del |
41 | human | 55291 | PPP6R3 | protein phosphatase 6 regul... | NM_001164161.2 | 23% | 23% | 1_2016del |
42 | human | 55291 | PPP6R3 | protein phosphatase 6 regul... | NM_001352368.2 | 23% | 23% | 1_2016del |
43 | human | 55291 | PPP6R3 | protein phosphatase 6 regul... | NM_001352375.2 | 23% | 23% | 1_2016del |
44 | human | 55291 | PPP6R3 | protein phosphatase 6 regul... | NM_001352372.2 | 23% | 22.9% | 1_1998del;2432_2449del |
45 | human | 55291 | PPP6R3 | protein phosphatase 6 regul... | NM_001352377.2 | 23% | 22.9% | 1_1998del;2432_2449del |
46 | human | 55291 | PPP6R3 | protein phosphatase 6 regul... | XM_006718612.3 | 22.9% | 22.9% | 1_1998del;2551_2580del |
47 | human | 55291 | PPP6R3 | protein phosphatase 6 regul... | NM_001164160.2 | 22.8% | 22.7% | 1_2016del;2450_2467del |
48 | human | 55291 | PPP6R3 | protein phosphatase 6 regul... | NM_001352364.2 | 22.8% | 22.7% | 1_2016del;2450_2467del |
49 | human | 55291 | PPP6R3 | protein phosphatase 6 regul... | NM_001352379.2 | 22.8% | 22.7% | 1_2016del;2450_2467del |
50 | human | 55291 | PPP6R3 | protein phosphatase 6 regul... | XM_006718608.3 | 22.7% | 22.7% | 1_2016del;2569_2598del |
51 | human | 55291 | PPP6R3 | protein phosphatase 6 regul... | XM_011545139.1 | 22.7% | 22.6% | 1_1998del;2432_2449del;2569_2598del |
52 | human | 55291 | PPP6R3 | protein phosphatase 6 regul... | NM_001352354.2 | 22.6% | 22.4% | 1_2016del;2450_2467del;2587_2616del |
53 | human | 55291 | PPP6R3 | protein phosphatase 6 regul... | NM_001352356.2 | 22.6% | 22.4% | 1_2016del;2450_2467del;2587_2616del |
54 | human | 55291 | PPP6R3 | protein phosphatase 6 regul... | XM_011545137.2 | 22.6% | 22.4% | 1_2016del;2450_2467del;2587_2616del |
55 | human | 55291 | PPP6R3 | protein phosphatase 6 regul... | XM_011545138.2 | 22.6% | 22.4% | 1_2016del;2450_2467del;2587_2616del |
56 | human | 55291 | PPP6R3 | protein phosphatase 6 regul... | NR_147965.2 | 12.2% | 1_1929del;2363_2518del;2689_4908del | |
57 | human | 55291 | PPP6R3 | protein phosphatase 6 regul... | NR_147970.2 | 12.1% | 1_1965del;2399_2554del;2725_4944del | |
58 | human | 55291 | PPP6R3 | protein phosphatase 6 regul... | NR_147968.2 | 11.8% | 1_2111del;2545_2700del;2871_5090del | |
59 | human | 55291 | PPP6R3 | protein phosphatase 6 regul... | NR_147969.2 | 11.5% | 1_2378del;2982_5201del | |
60 | human | 55291 | PPP6R3 | protein phosphatase 6 regul... | NR_147971.2 | 11.3% | 1_2505del;3109_5328del | |
61 | human | 55291 | PPP6R3 | protein phosphatase 6 regul... | NR_147966.2 | 11.2% | 1_2517del;2951_2968del;3139_5358del | |
62 | human | 55291 | PPP6R3 | protein phosphatase 6 regul... | NR_147967.2 | 11.2% | 1_2388del;2822_2977del;3148_5367del | |
63 | mouse | 52036 | Ppp6r3 | protein phosphatase 6, regu... | NM_001164159.1 | 21.1% | 22% | (many diffs) |
64 | mouse | 52036 | Ppp6r3 | protein phosphatase 6, regu... | XM_006531796.1 | 21.1% | 22% | (many diffs) |
65 | mouse | 52036 | Ppp6r3 | protein phosphatase 6, regu... | XM_017318250.1 | 21% | 21.7% | (many diffs) |
66 | mouse | 52036 | Ppp6r3 | protein phosphatase 6, regu... | XM_017318249.1 | 20.8% | 21.7% | (many diffs) |
67 | mouse | 52036 | Ppp6r3 | protein phosphatase 6, regu... | NM_029456.2 | 20.7% | 21.5% | (many diffs) |
68 | mouse | 52036 | Ppp6r3 | protein phosphatase 6, regu... | XM_006531794.1 | 20.7% | 21.4% | (many diffs) |
69 | mouse | 52036 | Ppp6r3 | protein phosphatase 6, regu... | XM_011248642.2 | 20.5% | 21.2% | (many diffs) |
70 | mouse | 52036 | Ppp6r3 | protein phosphatase 6, regu... | XM_017318248.1 | 20.4% | 21.2% | (many diffs) |
71 | mouse | 52036 | Ppp6r3 | protein phosphatase 6, regu... | XM_011248641.1 | 20.2% | 20.9% | (many diffs) |
72 | mouse | 52036 | Ppp6r3 | protein phosphatase 6, regu... | XM_006531792.1 | 20.1% | 20.9% | (many diffs) |
73 | mouse | 52036 | Ppp6r3 | protein phosphatase 6, regu... | NM_028999.1 | 20% | 20.8% | (many diffs) |
74 | mouse | 52036 | Ppp6r3 | protein phosphatase 6, regu... | XM_011248640.1 | 20% | 20.7% | (many diffs) |
75 | mouse | 52036 | Ppp6r3 | protein phosphatase 6, regu... | XM_006531789.1 | 19.9% | 20.5% | (many diffs) |
76 | mouse | 52036 | Ppp6r3 | protein phosphatase 6, regu... | XR_001782603.1 | 14.6% | (many diffs) | |
77 | mouse | 52036 | Ppp6r3 | protein phosphatase 6, regu... | XR_001782601.1 | 10.2% | (many diffs) | |
78 | mouse | 52036 | Ppp6r3 | protein phosphatase 6, regu... | XR_001782602.1 | 9.9% | (many diffs) | |
79 | mouse | 52036 | Ppp6r3 | protein phosphatase 6, regu... | XR_001782600.1 | 9.7% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 66
- ORF end:
- 669
- ORF length:
- 603
- Sequence:
-
1 ggtctatata agcagagctc tctggctaac tgtcgggatc aacaagtttg tacaaaaaag 61 ttggcatgga ggtggacctg agtgaaccac ccaactggtc agctaacttt gatgtcccaa 121 tggaaacaac ccacggtgct ccattggatt ctgtgggatc tgatgtctgg agcacagagg 181 agccgatgcc aactaaagag acgggctggg cttctttttc agagttcacg tcttccctga 241 gcacaaaaga ttctttaagg agtaattctc cagtggaaat ggaaaccagc actgaaccca 301 tggaccctct gactcccagt gcggctgccc tggcagtgca gccagaagcg gcaggcagtg 361 tggccatgga agccagctct gacggagagg aggatgcaga aagtacagac aaggtaactg 421 agacagtgat gaatggcggc atgaaggaaa cgctcagcct cactgtagat gccaagacag 481 agactgcggt cttcaaaagt gaggaaggga aactgtctac ctctcaagat gctgcttgta 541 aagacgcaga ggagtgtccc gagactgcag aggcgaagtg cgcggcgccc aggcctccca 601 gcagcagtcc cgagcagagg actggccaac caagcgcacc aggtgacact tcagtgaatg 661 gccctgtatn nccaactttc ttgtacaaag tggttggtaa gcctatccct aaccctctcc 721 tcggtctcga ttctacgtag taatgagcta gcgctaaccg gtggcgcgtt aagtcgacaa 781 tcaacctctg gatta