Transcript: Human XM_017000942.2

PREDICTED: Homo sapiens ST6 N-acetylgalactosaminide alpha-2,6-sialyltransferase 3 (ST6GALNAC3), transcript variant X4, mRNA.

Source:
NCBI, updated 2019-09-08
Taxon:
Homo sapiens (human)
Gene:
ST6GALNAC3 (256435)
Length:
7595
CDS:
1147..1800

Additional Resources:

NCBI RefSeq record:
XM_017000942.2
NBCI Gene record:
ST6GALNAC3 (256435)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Human XM_017000942.2, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Human Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000035365 GCAAGACAGAAGGGTATAGAA pLKO.1 1610 CDS 100% 5.625 7.875 N ST6GALNAC3 n/a
2 TRCN0000035367 GTTTGCTAAATGGGCCAAGAA pLKO.1 1737 CDS 100% 4.950 6.930 N ST6GALNAC3 n/a
3 TRCN0000035368 GAACTCACTATGGATACATAA pLKO.1 1058 5UTR 100% 13.200 9.240 N ST6GALNAC3 n/a
4 TRCN0000453943 GAACTCACTATGGATACATAA pLKO_005 1058 5UTR 100% 13.200 9.240 N St6galnac3 n/a
5 TRCN0000415633 GATGGTGACTCTGCTAGTAAT pLKO_005 1940 3UTR 100% 13.200 9.240 N ST6GALNAC3 n/a
6 TRCN0000431259 TGATCTTGCCGCATCACTTAA pLKO_005 1813 3UTR 100% 13.200 9.240 N ST6GALNAC3 n/a
7 TRCN0000035364 GCGTCTTGTAAATGAAGTGAA pLKO.1 957 5UTR 100% 4.950 3.465 N ST6GALNAC3 n/a
8 TRCN0000035366 GCTTCATAGCAGCGTTCCTTT pLKO.1 923 5UTR 100% 4.950 3.465 N ST6GALNAC3 n/a
9 TRCN0000164801 CCTCCCAAAGTACTGGGATTA pLKO.1 3 5UTR 100% 1.080 0.540 Y MAPKAPK5-AS1 n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript XM_017000942.2, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

Clone ID DNA Barcode Vector Sequenced %[?] Nuc. Match %[?] Prot. Match %[?] Epitope Tag Match Diffs[?] Addgene[?]
1 ccsbBroadEn_09915 pDONR223 100% 71% 70.8% None 0_1ins264;403C>A n/a
2 ccsbBroad304_09915 pLX_304 0% 71% 70.8% V5 0_1ins264;403C>A n/a
3 TRCN0000471367 GGGACCGATTACGATATGACAAGC pLX_317 44.5% 71% 70.8% V5 0_1ins264;403C>A n/a
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