Transcript: Human XM_017001097.2

PREDICTED: Homo sapiens G protein signaling modulator 2 (GPSM2), transcript variant X2, mRNA.

Source:
NCBI, updated 2019-09-08
Taxon:
Homo sapiens (human)
Gene:
GPSM2 (29899)
Length:
5097
CDS:
1340..3394

Additional Resources:

NCBI RefSeq record:
XM_017001097.2
NBCI Gene record:
GPSM2 (29899)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Human XM_017001097.2, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Human Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000426414 GTTAACCTTCAGTAGTCTATT pLKO_005 3519 3UTR 100% 13.200 18.480 N GPSM2 n/a
2 TRCN0000429252 TTAACCCTTGCAAGGACTATT pLKO_005 1604 CDS 100% 13.200 18.480 N GPSM2 n/a
3 TRCN0000435981 TTGTCAGCGACACCTAGATAT pLKO_005 1711 CDS 100% 13.200 18.480 N GPSM2 n/a
4 TRCN0000011025 GCATGATTATGCCAAAGCATT pLKO.1 1564 CDS 100% 4.950 6.930 N GPSM2 n/a
5 TRCN0000006467 CGGTAAGGAAACAATCTATTA pLKO.1 3428 3UTR 100% 13.200 10.560 N GPSM2 n/a
6 TRCN0000414463 ATCCAGATTAGATGATCAAAG pLKO_005 3157 CDS 100% 10.800 7.560 N GPSM2 n/a
7 TRCN0000006469 GCAGATACTATTGGAGATGAA pLKO.1 2789 CDS 100% 4.950 3.465 N GPSM2 n/a
8 TRCN0000006468 GCACTTTACAATCTTGGGAAT pLKO.1 1769 CDS 100% 4.050 2.835 N GPSM2 n/a
9 TRCN0000006470 CCTGATGACTAATGACAACAA pLKO.1 3091 CDS 100% 4.950 2.970 N GPSM2 n/a
10 TRCN0000434454 AGACCAACCTGGGCAACATAG pLKO_005 4011 3UTR 100% 10.800 5.400 Y SULT1A1 n/a
11 TRCN0000007228 CACCTGTAATCCCAGCACTTT pLKO.1 4080 3UTR 100% 4.950 2.475 Y CFLAR n/a
12 TRCN0000166635 CACCTGTAATCCCAGCACTTT pLKO.1 4080 3UTR 100% 4.950 2.475 Y C19orf31 n/a
13 TRCN0000021429 CACACCTGTAATCCCAGCATT pLKO.1 4078 3UTR 100% 4.950 2.475 Y ERN2 n/a
14 TRCN0000138998 CACACCTGTAATCCCAGCATT pLKO.1 4078 3UTR 100% 4.950 2.475 Y P3H4 n/a
15 TRCN0000344020 CACACCTGTAATCCCAGCATT pLKO_005 4078 3UTR 100% 4.950 2.475 Y P3H4 n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript XM_017001097.2, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

No results found.