Transcript: Human XM_017001406.2

PREDICTED: Homo sapiens ribosomal RNA adenine dimethylase domain containing 1 (RRNAD1), transcript variant X10, mRNA.

Source:
NCBI, updated 2019-09-08
Taxon:
Homo sapiens (human)
Gene:
RRNAD1 (51093)
Length:
2008
CDS:
884..1801

Additional Resources:

NCBI RefSeq record:
XM_017001406.2
NBCI Gene record:
RRNAD1 (51093)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Human XM_017001406.2, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Human Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000183336 GATGCCTACATCATCGAATTT pLKO.1 384 5UTR 100% 13.200 18.480 N RRNAD1 n/a
2 TRCN0000414929 TAACAGCTCCATTCCGGAAAC pLKO_005 738 5UTR 100% 6.000 8.400 N RRNAD1 n/a
3 TRCN0000131151 GTTCCATCTTGGATGCCTACA pLKO.1 373 5UTR 100% 4.050 5.670 N RRNAD1 n/a
4 TRCN0000433983 TGTTAACCTCACCCGTGTCCT pLKO_005 341 5UTR 100% 2.640 3.696 N RRNAD1 n/a
5 TRCN0000417086 TGTTGCCTTGCTGAGACACTT pLKO_005 1165 CDS 100% 4.950 3.960 N RRNAD1 n/a
6 TRCN0000129584 CTAACAGCTCCATTCCGGAAA pLKO.1 737 5UTR 100% 4.050 3.240 N RRNAD1 n/a
7 TRCN0000146710 CGAGCTCAAGATTGAAGAATA pLKO.1 1477 CDS 100% 13.200 9.240 N RRNAD1 n/a
8 TRCN0000183184 GAGCTCAAGATTGAAGAATAT pLKO.1 1478 CDS 100% 13.200 9.240 N RRNAD1 n/a
9 TRCN0000414073 AGTGGGCTGCTGCTACATGAA pLKO_005 1219 CDS 100% 4.950 3.465 N RRNAD1 n/a
10 TRCN0000196232 GAAACATGTCAGGCCCAAGAA pLKO.1 754 5UTR 100% 4.950 3.465 N RRNAD1 n/a
11 TRCN0000422426 TGGCACTCTACCGTTCCATCT pLKO_005 361 5UTR 100% 4.050 2.835 N RRNAD1 n/a
12 TRCN0000196156 GCAGAGTACATCTCATCCAGA pLKO.1 1860 3UTR 100% 2.640 1.848 N RRNAD1 n/a
13 TRCN0000173738 CCTGAACTCTCTCCCAGAAAT pLKO.1 1712 CDS 100% 13.200 7.920 N Rrnad1 n/a
14 TRCN0000336016 CCTGAACTCTCTCCCAGAAAT pLKO_005 1712 CDS 100% 13.200 7.920 N Rrnad1 n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript XM_017001406.2, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

Clone ID DNA Barcode Vector Sequenced %[?] Nuc. Match %[?] Prot. Match %[?] Epitope Tag Match Diffs[?] Addgene[?]
1 ccsbBroadEn_08216 pDONR223 100% 64.1% 64% None 0_1ins510;688G>C n/a
2 ccsbBroad304_08216 pLX_304 0% 64.1% 64% V5 0_1ins510;688G>C n/a
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