Transcript: Human XM_017001785.1

PREDICTED: Homo sapiens ASH1 like histone lysine methyltransferase (ASH1L), transcript variant X4, mRNA.

Source:
NCBI, updated 2019-09-08
Taxon:
Homo sapiens (human)
Gene:
ASH1L (55870)
Length:
11479
CDS:
188..9082

Additional Resources:

NCBI RefSeq record:
XM_017001785.1
NBCI Gene record:
ASH1L (55870)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Human XM_017001785.1, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Human Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000246167 GAGTCGATTGATCCAATTAAA pLKO_005 6202 CDS 100% 15.000 21.000 N ASH1L n/a
2 TRCN0000246169 ATCCCGTCGGTTCTATCATAA pLKO_005 8368 CDS 100% 13.200 18.480 N ASH1L n/a
3 TRCN0000016171 CGACGATGTTATTCGCTGTAT pLKO.1 7918 CDS 100% 4.950 6.930 N ASH1L n/a
4 TRCN0000016172 CGTACTTTGTTTATCCCAGAA pLKO.1 9044 CDS 100% 4.050 5.670 N ASH1L n/a
5 TRCN0000358486 CTTCACCTTAAGGGTTAATAA pLKO_005 9306 3UTR 100% 15.000 12.000 N ASH1L n/a
6 TRCN0000246170 CGGTAGTTCTTGCAATTATTT pLKO_005 9749 3UTR 100% 15.000 10.500 N ASH1L n/a
7 TRCN0000358527 TGCTGTTGGAGAGCGATATAA pLKO_005 4753 CDS 100% 15.000 10.500 N ASH1L n/a
8 TRCN0000358528 AGATCCTCACTGGTTACTATA pLKO_005 7668 CDS 100% 13.200 9.240 N ASH1L n/a
9 TRCN0000246168 CGTCTACGAAAGGCCTATTAC pLKO_005 7784 CDS 100% 13.200 9.240 N ASH1L n/a
10 TRCN0000082298 GCTGCCACATTTGGCTCTAAA pLKO.1 3263 CDS 100% 13.200 9.240 N Ash1l n/a
11 TRCN0000082300 CCCATTCATGTTGGAAAGTAT pLKO.1 6278 CDS 100% 5.625 3.938 N Ash1l n/a
12 TRCN0000016168 CCTGCCAAATACCATAAGAAA pLKO.1 4493 CDS 100% 5.625 3.938 N ASH1L n/a
13 TRCN0000016170 CCCTGAAACTTCTTCACAGTT pLKO.1 1900 CDS 100% 4.950 3.465 N ASH1L n/a
14 TRCN0000082299 CCTCCTACTTTGTTGCCAAAT pLKO.1 3674 CDS 100% 10.800 6.480 N Ash1l n/a
15 TRCN0000301835 CCTCCTACTTTGTTGCCAAAT pLKO_005 3674 CDS 100% 10.800 6.480 N Ash1l n/a
16 TRCN0000246171 GATGATTGAGCAGTATCATAA pLKO_005 6733 CDS 100% 1.320 0.792 N ASH1L n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript XM_017001785.1, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

No results found.