Transcript: Human XM_017002205.1

PREDICTED: Homo sapiens vacuolar protein sorting 72 homolog (VPS72), transcript variant X1, mRNA.

Source:
NCBI, updated 2019-09-08
Taxon:
Homo sapiens (human)
Gene:
VPS72 (6944)
Length:
1277
CDS:
360..1091

Additional Resources:

NCBI RefSeq record:
XM_017002205.1
NBCI Gene record:
VPS72 (6944)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Human XM_017002205.1, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Human Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000380595 TTACGGTCACTGGAGACATAT pLKO_005 513 CDS 100% 13.200 18.480 N VPS72 n/a
2 TRCN0000005683 GCAGGTTCATAAGAAGCGGAA pLKO.1 560 CDS 100% 2.160 3.024 N VPS72 n/a
3 TRCN0000381176 AGAAGGCACTACTGCCATTAG pLKO_005 304 5UTR 100% 10.800 8.640 N VPS72 n/a
4 TRCN0000005682 GAGATGTCTAGTCCTCAGAAA pLKO.1 1093 3UTR 100% 4.950 3.960 N VPS72 n/a
5 TRCN0000335845 GAGATGTCTAGTCCTCAGAAA pLKO_005 1093 3UTR 100% 4.950 3.960 N VPS72 n/a
6 TRCN0000379663 AGATCACAGAAGAGCTTAATT pLKO_005 493 CDS 100% 15.000 10.500 N VPS72 n/a
7 TRCN0000335930 AGTAGTCACCAAGGCCTATAA pLKO_005 212 5UTR 100% 13.200 9.240 N VPS72 n/a
8 TRCN0000381004 ACGAAGTGGACTCTGACTTTG pLKO_005 127 5UTR 100% 10.800 7.560 N VPS72 n/a
9 TRCN0000379536 AGGAACCTCTCAAGAGCTTAA pLKO_005 232 5UTR 100% 10.800 7.560 N VPS72 n/a
10 TRCN0000380543 GCCCATAATCACCTATCATTC pLKO_005 590 CDS 100% 10.800 7.560 N VPS72 n/a
11 TRCN0000382516 TAGTCCTCAGAAACTTCTTTC pLKO_005 1101 3UTR 100% 10.800 7.560 N VPS72 n/a
12 TRCN0000005684 GAGGCTTACAAGAAGTACATT pLKO.1 957 CDS 100% 5.625 3.938 N VPS72 n/a
13 TRCN0000335927 GAGGCTTACAAGAAGTACATT pLKO_005 957 CDS 100% 5.625 3.938 N VPS72 n/a
14 TRCN0000380884 TCCGGAGATGATGAGTATCAA pLKO_005 84 5UTR 100% 5.625 3.938 N VPS72 n/a
15 TRCN0000005685 AGAGATGTCTAGTCCTCAGAA pLKO.1 1092 CDS 100% 4.950 3.465 N VPS72 n/a
16 TRCN0000005686 CCTGTTACAGACATACCCTAT pLKO.1 906 CDS 100% 4.050 2.835 N VPS72 n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript XM_017002205.1, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

No results found.