Transcript: Human XM_017003287.1

PREDICTED: Homo sapiens par-3 family cell polarity regulator beta (PARD3B), transcript variant X6, mRNA.

Source:
NCBI, updated 2019-09-08
Taxon:
Homo sapiens (human)
Gene:
PARD3B (117583)
Length:
8862
CDS:
5253..8636

Additional Resources:

NCBI RefSeq record:
XM_017003287.1
NBCI Gene record:
PARD3B (117583)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Human XM_017003287.1, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Human Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000419266 GTAACCACCTCTAGGCGAAAT pLKO_005 7125 CDS 100% 10.800 15.120 N PARD3B n/a
2 TRCN0000429082 TACATGGTCCCGGTCCCATTT pLKO_005 6487 CDS 100% 10.800 15.120 N PARD3B n/a
3 TRCN0000117963 CGCCAAGAACTAAGGACACAT pLKO.1 5845 CDS 100% 4.950 6.930 N PARD3B n/a
4 TRCN0000432738 GGTGGATTCAGCAGTATATTT pLKO_005 7307 CDS 100% 15.000 12.000 N PARD3B n/a
5 TRCN0000424230 TGTACAGACAGAACTACTAAC pLKO_005 5822 CDS 100% 10.800 8.640 N PARD3B n/a
6 TRCN0000117965 CCTGGTTACTGGGTGAAGATT pLKO.1 5400 CDS 100% 5.625 3.938 N PARD3B n/a
7 TRCN0000117966 CCAACCACGAAGCTATGGAAA pLKO.1 6961 CDS 100% 4.950 3.465 N PARD3B n/a
8 TRCN0000117964 CCATGCTTTGAGAACTGTCAA pLKO.1 7098 CDS 100% 4.950 3.465 N PARD3B n/a
9 TRCN0000117962 GCGTGAAAGGATTGGAGCAAA pLKO.1 8009 CDS 100% 4.950 3.465 N PARD3B n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript XM_017003287.1, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

No results found.