Transcript: Human XM_017004373.2

PREDICTED: Homo sapiens syntrophin gamma 2 (SNTG2), transcript variant X15, mRNA.

Source:
NCBI, updated 2019-09-08
Taxon:
Homo sapiens (human)
Gene:
SNTG2 (54221)
Length:
2474
CDS:
1408..2352

Additional Resources:

NCBI RefSeq record:
XM_017004373.2
NBCI Gene record:
SNTG2 (54221)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Human XM_017004373.2, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Human Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000180547 GCTCGCATCTCAAGGTACAAA pLKO.1 1411 CDS 100% 5.625 7.875 N SNTG2 n/a
2 TRCN0000180621 GCATTTCTGAAGCTCCCGTTA pLKO.1 1210 5UTR 100% 4.050 3.240 N SNTG2 n/a
3 TRCN0000243241 CTCGCATCTCAAGGTACAAAG pLKO_005 1412 CDS 100% 10.800 7.560 N SNTG2 n/a
4 TRCN0000243239 TTACCATCACCGTTGAGTATC pLKO_005 1175 5UTR 100% 10.800 7.560 N SNTG2 n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript XM_017004373.2, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

Clone ID DNA Barcode Vector Sequenced %[?] Nuc. Match %[?] Prot. Match %[?] Epitope Tag Match Diffs[?] Addgene[?]
1 ccsbBroadEn_12034 pDONR223 100% 76.1% 75.9% None 0_1ins294;809C>T n/a
2 ccsbBroad304_12034 pLX_304 0% 76.1% 75.9% V5 0_1ins294;809C>T n/a
3 TRCN0000471988 ATCCACCCTGGGGACTCACCTCAG pLX_317 9.6% 76.1% 75.9% V5 0_1ins294;809C>T n/a
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