Transcript: Human XM_017008688.2

PREDICTED: Homo sapiens meiotic nuclear divisions 1 (MND1), transcript variant X1, mRNA.

Source:
NCBI, updated 2019-09-08
Taxon:
Homo sapiens (human)
Gene:
MND1 (84057)
Length:
1304
CDS:
497..1069

Additional Resources:

NCBI RefSeq record:
XM_017008688.2
NBCI Gene record:
MND1 (84057)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Human XM_017008688.2, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Human Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000414338 ACTCGCATGATGGAAATATTT pLKO_005 491 5UTR 100% 15.000 21.000 N MND1 n/a
2 TRCN0000420932 GGATCGGAACTTCTAATTATT pLKO_005 642 CDS 100% 15.000 21.000 N MND1 n/a
3 TRCN0000430993 GTTTGCCTGTAACTGTGTTTA pLKO_005 1153 3UTR 100% 13.200 18.480 N MND1 n/a
4 TRCN0000134050 CAAGTAAAGCTCTTCATGCAA pLKO.1 675 CDS 100% 3.000 2.400 N MND1 n/a
5 TRCN0000425400 ACTTTGACTACATAGACTAAA pLKO_005 1050 CDS 100% 13.200 9.240 N MND1 n/a
6 TRCN0000412439 CTAACTAAGTGTACTGAATTG pLKO_005 1130 3UTR 100% 10.800 7.560 N MND1 n/a
7 TRCN0000191251 CCAGAAGACTTTGACTACATA pLKO.1 1043 CDS 100% 5.625 3.938 N Mnd1 n/a
8 TRCN0000137198 GCTGCTAACAGATGGACTGAT pLKO.1 944 CDS 100% 4.950 3.465 N MND1 n/a
9 TRCN0000137313 GCTCCCAAAGAGAAAGGCATT pLKO.1 557 CDS 100% 4.050 2.835 N MND1 n/a
10 TRCN0000133692 GCATTACTGCTATGTCAGTAA pLKO.1 573 CDS 100% 0.495 0.347 N MND1 n/a
11 TRCN0000137233 GAGACCAAAGGGAACAGCTAA pLKO.1 843 CDS 100% 4.950 2.970 N MND1 n/a
12 TRCN0000190676 GCTCCCAAAGAGAAAGGCATA pLKO.1 557 CDS 100% 4.050 2.835 N Mnd1 n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript XM_017008688.2, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

Clone ID DNA Barcode Vector Sequenced %[?] Nuc. Match %[?] Prot. Match %[?] Epitope Tag Match Diffs[?] Addgene[?]
1 ccsbBroadEn_04318 pDONR223 100% 92.6% 92.6% None 0_1ins45 n/a
2 ccsbBroad304_04318 pLX_304 0% 92.6% 92.6% V5 0_1ins45 n/a
3 TRCN0000466193 TTTCGGACACACCTGAGTGTAAGC pLX_317 54.8% 92.6% 92.6% V5 0_1ins45 n/a
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