Transcript: Human XM_017008913.2

PREDICTED: Homo sapiens occludin (OCLN), transcript variant X1, mRNA.

Source:
NCBI, updated 2019-09-08
Taxon:
Homo sapiens (human)
Gene:
OCLN (100506658)
Length:
2512
CDS:
207..1613

Additional Resources:

NCBI RefSeq record:
XM_017008913.2
NBCI Gene record:
OCLN (100506658)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Human XM_017008913.2, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Human Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000159613 GATCTCTATATGGTTCACAAA pLKO.1 820 CDS 100% 4.950 6.930 N OCLN n/a
2 TRCN0000158804 GCATAGGTGATCTCATTTAAT pLKO.1 1951 3UTR 100% 15.000 10.500 N OCLN n/a
3 TRCN0000158842 GCAAATGACTTTGGACCATAA pLKO.1 1676 3UTR 100% 10.800 7.560 N OCLN n/a
4 TRCN0000166691 CCTCTCAACCACCTTTCAGAT pLKO.1 1972 3UTR 100% 4.950 3.465 N OCLN n/a
5 TRCN0000120881 GCTCATTATTGTGATGTGCAT pLKO.1 416 CDS 100% 2.640 1.848 N Ocln n/a
6 TRCN0000159414 GCTCATTATTGTGATGTGCAT pLKO.1 416 CDS 100% 2.640 1.848 N OCLN n/a
7 TRCN0000158463 CAAGCAGTTAAAGAGCAAATT pLKO.1 1544 CDS 100% 13.200 7.920 N OCLN n/a
8 TRCN0000159771 GAATCATTGCAAGCAGTTAAA pLKO.1 1535 CDS 100% 13.200 6.600 Y OCLN n/a
9 TRCN0000158638 CTACAGGAATACAAGAGCTTA pLKO.1 1362 CDS 100% 4.950 2.475 Y OCLN n/a
10 TRCN0000159413 GAATTGGATGACTATAGAGAA pLKO.1 1431 CDS 100% 4.950 2.475 Y OCLN n/a
Download CSV

shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript XM_017008913.2, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

Download CSV

All ORF constructs matching this transcript

Clone ID DNA Barcode Vector Sequenced %[?] Nuc. Match %[?] Prot. Match %[?] Epitope Tag Match Diffs[?] Addgene[?]
1 ccsbBroadEn_06667 pDONR223 100% 89.5% 89.4% None 96G>A;698T>C;728_729ins162 n/a
2 ccsbBroad304_06667 pLX_304 0% 89.5% 89.4% V5 96G>A;698T>C;728_729ins162 n/a
3 TRCN0000469640 GCATCCATCTACTCGCACACCTTC pLX_317 27.2% 89.5% 89.4% V5 96G>A;698T>C;728_729ins162 n/a
Download CSV