Transcript: Human XM_017009240.2

PREDICTED: Homo sapiens elongation factor for RNA polymerase II 2 (ELL2), transcript variant X3, mRNA.

Source:
NCBI, updated 2019-09-08
Taxon:
Homo sapiens (human)
Gene:
ELL2 (22936)
Length:
5987
CDS:
688..2214

Additional Resources:

NCBI RefSeq record:
XM_017009240.2
NBCI Gene record:
ELL2 (22936)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Human XM_017009240.2, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Human Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000274299 CCCTGGTTCCGTTCTACTAAA pLKO_005 1608 CDS 100% 13.200 18.480 N ELL2 n/a
2 TRCN0000274361 TGGATAAACGTAAGCCTATTT pLKO_005 2621 3UTR 100% 13.200 18.480 N ELL2 n/a
3 TRCN0000017912 CCCTGCAAATACAATTCGAAA pLKO.1 852 CDS 100% 4.950 6.930 N ELL2 n/a
4 TRCN0000274359 CCCTGCAAATACAATTCGAAA pLKO_005 852 CDS 100% 4.950 6.930 N ELL2 n/a
5 TRCN0000017909 GCCGTTCAGAATCTCCTGTAT pLKO.1 1193 CDS 100% 4.950 6.930 N ELL2 n/a
6 TRCN0000203090 GCCACAAGAATTTAATTCCTT pLKO.1 381 5UTR 100% 3.000 4.200 N Ell2 n/a
7 TRCN0000274301 GGACCTCTCATATACCTTAAA pLKO_005 1053 CDS 100% 13.200 10.560 N ELL2 n/a
8 TRCN0000285192 ACCAACACTAAATGGTCATTT pLKO_005 1326 CDS 100% 13.200 9.240 N ELL2 n/a
9 TRCN0000017908 CCTGGGATTTATACAAGATAA pLKO.1 633 5UTR 100% 13.200 9.240 N ELL2 n/a
10 TRCN0000017910 CCAGAATTATAAGGATGACTT pLKO.1 1914 CDS 100% 4.950 3.465 N ELL2 n/a
11 TRCN0000017911 CGACCTTCAATCCAGTTCCAA pLKO.1 404 5UTR 100% 3.000 2.100 N ELL2 n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript XM_017009240.2, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

No results found.