Transcript: Human XM_017010869.1

PREDICTED: Homo sapiens mitogen-activated protein kinase kinase kinase 4 (MAP3K4), transcript variant X2, mRNA.

Source:
NCBI, updated 2019-09-08
Taxon:
Homo sapiens (human)
Gene:
MAP3K4 (4216)
Length:
5971
CDS:
903..5456

Additional Resources:

NCBI RefSeq record:
XM_017010869.1
NBCI Gene record:
MAP3K4 (4216)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Human XM_017010869.1, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Human Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000415053 CCTCAAGCATCGCATAGTTTA pLKO_005 2775 CDS 100% 13.200 18.480 N MAP3K4 n/a
2 TRCN0000010558 AGGTTAAAGAAGCTGCATGTT pLKO.1 5655 3UTR 100% 4.950 6.930 N MAP3K4 n/a
3 TRCN0000199102 CCGTGACATCAGCGTAGTGTT pLKO.1 5741 3UTR 100% 4.950 6.930 N MAP3K4 n/a
4 TRCN0000000849 CCGTGACATTAAAGGTGCCAA pLKO.1 5012 CDS 100% 2.640 3.696 N MAP3K4 n/a
5 TRCN0000417139 GCCAGCCAGTCGGTCTAATTT pLKO_005 947 CDS 100% 15.000 12.000 N MAP3K4 n/a
6 TRCN0000000851 GCCCGGAAGTGGATGAATTAT pLKO.1 3837 CDS 100% 15.000 12.000 N MAP3K4 n/a
7 TRCN0000194922 CCATCTCTCTTGAGTATTAAG pLKO.1 2556 CDS 100% 13.200 10.560 N MAP3K4 n/a
8 TRCN0000000852 CAACCAAACATCAGAGGAATA pLKO.1 916 CDS 100% 10.800 7.560 N MAP3K4 n/a
9 TRCN0000078953 GCTGCATGTTAAGTGCCATTA pLKO.1 5666 3UTR 100% 10.800 7.560 N LOC433718 n/a
10 TRCN0000196769 GCATGTTAAGTGCCATTACTA pLKO.1 5669 3UTR 100% 5.625 3.938 N MAP3K4 n/a
11 TRCN0000000850 GCTTCGCCTTTGTTAGAGATA pLKO.1 1549 CDS 100% 4.950 3.465 N MAP3K4 n/a
12 TRCN0000078956 GTCAAGGTTTGCACAGATGAA pLKO.1 5430 CDS 100% 4.950 3.465 N LOC433718 n/a
13 TRCN0000196922 GCAGTCCATTGAGGGACTTAT pLKO.1 3518 CDS 100% 1.320 0.924 N MAP3K4 n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript XM_017010869.1, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

No results found.