Transcript: Human XM_017011567.1

PREDICTED: Homo sapiens synaptosome associated protein 91 (SNAP91), transcript variant X18, mRNA.

Source:
NCBI, updated 2019-09-08
Taxon:
Homo sapiens (human)
Gene:
SNAP91 (9892)
Length:
4181
CDS:
89..2770

Additional Resources:

NCBI RefSeq record:
XM_017011567.1
NBCI Gene record:
SNAP91 (9892)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Human XM_017011567.1, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Human Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000379484 CAACGAGACCAATGTTAATAT pLKO_005 235 CDS 100% 15.000 12.000 N SNAP91 n/a
2 TRCN0000152106 CCCAAACTCTTCCCATAAATT pLKO.1 3159 3UTR 100% 15.000 10.500 N SNAP91 n/a
3 TRCN0000379873 GCTACAATGATGGTGTTATTA pLKO_005 717 CDS 100% 15.000 10.500 N SNAP91 n/a
4 TRCN0000382124 GGACCCATTAGCGGATCTTAA pLKO_005 2731 CDS 100% 13.200 9.240 N SNAP91 n/a
5 TRCN0000382467 TGGATCCCATGGTTATGATAT pLKO_005 427 CDS 100% 13.200 9.240 N SNAP91 n/a
6 TRCN0000156678 GCCAGCTTAGTAGGCAATCTT pLKO.1 2330 CDS 100% 5.625 3.938 N SNAP91 n/a
7 TRCN0000151943 CGGATCTTAACATCAAGGATT pLKO.1 2742 CDS 100% 4.950 3.465 N SNAP91 n/a
8 TRCN0000154577 GCTGCTAAAGAGTATGCCAAT pLKO.1 577 CDS 100% 4.050 2.835 N SNAP91 n/a
9 TRCN0000382423 TTGTGTATTGTACGATGTAAA pLKO_005 2996 3UTR 100% 13.200 7.920 N SNAP91 n/a
10 TRCN0000155806 CCAGTACCAAACCCAATACTT pLKO.1 2863 3UTR 100% 5.625 3.375 N SNAP91 n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript XM_017011567.1, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

Clone ID DNA Barcode Vector Sequenced %[?] Nuc. Match %[?] Prot. Match %[?] Epitope Tag Match Diffs[?] Addgene[?]
1 ccsbBroadEn_11428 pDONR223 100% 66.5% 66.4% None (many diffs) n/a
2 ccsbBroad304_11428 pLX_304 0% 66.5% 66.4% V5 (many diffs) n/a
3 TRCN0000473453 GGCGATTGTAATACATTATATCAC pLX_317 25% 66.5% 66.4% V5 (many diffs) n/a
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