Transcript: Human XM_017012490.2

PREDICTED: Homo sapiens lysine methyltransferase 2C (KMT2C), transcript variant X27, mRNA.

Source:
NCBI, updated 2019-09-08
Taxon:
Homo sapiens (human)
Gene:
KMT2C (58508)
Length:
13161
CDS:
32..11257

Additional Resources:

NCBI RefSeq record:
XM_017012490.2
NBCI Gene record:
KMT2C (58508)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Human XM_017012490.2, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Human Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000358272 CATACTGGGCCAAGCATATAT pLKO_005 4012 CDS 100% 15.000 21.000 N KMT2C n/a
2 TRCN0000426936 GCTGGCCACGGCCTTATTAAA pLKO_005 11703 3UTR 100% 15.000 21.000 N KMT2C n/a
3 TRCN0000412602 GCGGCAGAAGTTACGTGAAAT pLKO_005 3505 CDS 100% 13.200 18.480 N KMT2C n/a
4 TRCN0000008744 CGCACCTTATAGTAAACAGTT pLKO.1 10762 CDS 100% 4.950 6.930 N KMT2C n/a
5 TRCN0000008742 GAGGCGATTCAACACACCATT pLKO.1 11301 3UTR 100% 4.950 6.930 N KMT2C n/a
6 TRCN0000238935 ATGACCCATTAGCTGATATTT pLKO_005 591 CDS 100% 15.000 12.000 N Kmt2c n/a
7 TRCN0000368534 ATGACCCATTAGCTGATATTT pLKO_005 591 CDS 100% 15.000 12.000 N KMT2C n/a
8 TRCN0000008743 CCCTGTTAGAATGCCCAGTTT pLKO.1 6331 CDS 100% 4.950 3.960 N KMT2C n/a
9 TRCN0000238937 GATAGAGCTAAGGGATAATAA pLKO_005 11809 3UTR 100% 15.000 10.500 N Kmt2c n/a
10 TRCN0000358273 TGCAATTACAGATCCTATAAT pLKO_005 5626 CDS 100% 15.000 10.500 N KMT2C n/a
11 TRCN0000420518 TCCTCAGTCCTTTAGGTTAAA pLKO_005 11397 3UTR 100% 13.200 9.240 N KMT2C n/a
12 TRCN0000008746 CCAGATACTTTAGTTGATGAA pLKO.1 287 CDS 100% 4.950 3.465 N KMT2C n/a
13 TRCN0000008745 CGTCTGAAACAACGTCTGATA pLKO.1 4356 CDS 100% 4.950 3.465 N KMT2C n/a
14 TRCN0000424482 GTAGTTGAATTGGATACTTTA pLKO_005 4541 CDS 100% 13.200 7.920 N KMT2C n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript XM_017012490.2, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

No results found.