Transcript: Human XM_017014624.1

PREDICTED: Homo sapiens RAN binding protein 6 (RANBP6), transcript variant X1, mRNA.

Source:
NCBI, updated 2019-09-08
Taxon:
Homo sapiens (human)
Gene:
RANBP6 (26953)
Length:
3521
CDS:
175..2256

Additional Resources:

NCBI RefSeq record:
XM_017014624.1
NBCI Gene record:
RANBP6 (26953)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Human XM_017014624.1, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Human Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000420191 CATTCCGTCTTGGTGATTAAA pLKO_005 430 CDS 100% 15.000 21.000 N RANBP6 n/a
2 TRCN0000414641 ATCGAGTGCATTAGCCATATT pLKO_005 634 CDS 100% 13.200 18.480 N RANBP6 n/a
3 TRCN0000148942 CCAAGAATTGAGACAGGTGAA pLKO.1 1383 CDS 100% 4.050 5.670 N RANBP6 n/a
4 TRCN0000414144 TTTATGCAAGATGCATCAAAT pLKO_005 679 CDS 100% 13.200 9.240 N RANBP6 n/a
5 TRCN0000146440 CCCTCACTAAAGCACATTGTT pLKO.1 568 CDS 100% 5.625 3.938 N RANBP6 n/a
6 TRCN0000148875 CTCTGCAAGATGAGGATGAAT pLKO.1 1442 CDS 100% 5.625 3.938 N RANBP6 n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript XM_017014624.1, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

Clone ID DNA Barcode Vector Sequenced %[?] Nuc. Match %[?] Prot. Match %[?] Epitope Tag Match Diffs[?] Addgene[?]
1 ccsbBroadEn_02975 pDONR223 100% 62.6% 62.3% None (many diffs) n/a
2 ccsbBroad304_02975 pLX_304 0% 62.6% 62.3% V5 (many diffs) n/a
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